LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte14g00072	ATGGGGAAAAGGAAAAGAGCGCAAGAGGAGAGCAGCAGCTCTGATGGTAACGTGGATTTGCAGCAGCTGATGGTCGTTGCAGCTGAAGCCCTAGGGAGAGCAACAACTAGAAGGAAGAAGTACATTGGGGTTCGCCAAAGGCCGTCAGGTAGATGGGTGGCTGAGATAAAGGATACAATACACAACATAAGAGTGTGGCTTGGCACGTATGACACTGCTGAAGATGCTGCAAGGGCCTATGATGAAGCAGCATGCATGCTTCGTGGAACCAATACTCGCACCAATTTCTCACGCCGCGATTATCCGAATCCAAATCCAGCCCTACCTTCAAAAATTTCCAATCTTCTACTTCTGAGACTTAAAGCCAGGATAGAGGCCTCTAACTTTGTTGCTCCTTCGTCTTCTTTCAACGTTGATCTTCATGAGAAAGAAATGGTAGAAGACCCCTCGTTTGATACTAGTAGTTATCTGAACCTGTACCTGCATGAAGATGGTGTCGTTCATGAGAATCATGATGCTGCTAGTAGTAATAGTCCTGGTGAAATGAATGTGAGTGGTAGGACGGAATTAAGTTCTACTGTTCACTTAAGGACTGATCATCAAGGTGTGGACCATAATTCGTCCGCTGCTGTTGATGGTAGCAATCAAGAGGGTTACAGAAAATCTGAGGAGAAAGAAGAATTGGAAGAATGTGACATGGGAATCATAGACTTCGAATCTCTTGATTCCATTGTATCAAATTTTGAATTTTCACCGTTTGAGATAGTGCAGGAAATGGTAGCAGTAGAGGAGGATAATTATGGGGAGAAGACATCAACAGTTAACGAAACTGTTAAGATGATGAAGTTTGAGCGCAAATTCTCTGCTTCACTATATGCCTTCAATGGGGTTTCGGAGTGTCTGAGGCTTGAAGATGGGTCAGCGGACACTAGTGGACTCGAAAGCTATGAAGCAGGACAAATGGTCACCTCCAATAGTATAAATAGCCATATGAATGATGAAGGGGTTAAGAGAAATGAGGAGGATAACTATTTTGAACAAATGCTTCAAGAACAAATTCAGTGCATGTCGAATTTGGTAGAGTCCTCTTCATCAATGTCATCATCATAG	1110	0.4324	MGKRKRAQEESSSSDGNVDLQQLMVVAAEALGRATTRRKKYIGVRQRPSGRWVAEIKDTIHNIRVWLGTYDTAEDAARAYDEAACMLRGTNTRTNFSRRDYPNPNPALPSKISNLLLLRLKARIEASNFVAPSSSFNVDLHEKEMVEDPSFDTSSYLNLYLHEDGVVHENHDAASSNSPGEMNVSGRTELSSTVHLRTDHQGVDHNSSAAVDGSNQEGYRKSEEKEELEECDMGIIDFESLDSIVSNFEFSPFEIVQEMVAVEEDNYGEKTSTVNETVKMMKFERKFSASLYAFNGVSECLRLEDGSADTSGLESYEAGQMVTSNSINSHMNDEGVKRNEEDNYFEQMLQEQIQCMSNLVESSSSMSSS*	370

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pte14g00072	369	CDD	AP2	39	96	IPR001471	GO:0003700\|GO:0006355
Pte14g00072	369	SUPERFAMILY	DNA-binding domain	40	97	IPR016177	GO:0003677
Pte14g00072	369	MobiDBLite	consensus disorder prediction	200	221	-	-
Pte14g00072	369	Gene3D	AP2/ERF domain	39	98	IPR036955	GO:0003700\|GO:0006355
Pte14g00072	369	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	10	215	-	-
Pte14g00072	369	MobiDBLite	consensus disorder prediction	200	215	-	-
Pte14g00072	369	Pfam	AP2 domain	40	89	IPR001471	GO:0003700\|GO:0006355
Pte14g00072	369	ProSiteProfiles	AP2/ERF domain profile.	40	97	IPR001471	GO:0003700\|GO:0006355
Pte14g00072	369	FunFam	ethylene-responsive transcription factor RAP2-11	39	98	-	-
Pte14g00072	369	PRINTS	Ethylene responsive element binding protein signature	63	79	IPR001471	GO:0003700\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte14g00072	Pte-Chr14	3329817	3330926	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte14g00072	38	116	AP2-EREBP Transcription Factor Family	AT5G19790	68.354	3.39e-31	117

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Pte14g00072		AP2	2.3e-15	CL0081

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte14g00072	K09286		-	jre:109003219	239.965

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