Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte14g00036 ATGCATAATGGTGACGCTTTATCTACTTCTGTTACTGGCGCCGGTGGCCACGGAAGCTGTCAATATCAACCAAAATGCGATGTTTTTGGTTCGCTTTACTCTTCTCTGTTCTTTGACAAGCAACTCGGTTTTGATGTGCCGATAAGTTCCTTTGAAGAAAGCTCAGACACGGACTACTTGTTCTCAAGCTCTTTGGTACCCAAACAGCCCGTGTATGACTCTTGCGCTGTGCAGAAAAACCAGGATCTGATAAACGGCCATGCGCTCTGCCTTTCACACCTACGTGAAACGACCAAAGAAGCTGAAGCTCTGAGGCGTGAGAACACTCATCTTCGTACAGTTAACCAGGAGTTAAACAACCAATTGACATTCTCCATTAAGGCTAGGCTTAACAATCAGCACTATCTGCTAGATGGTTCATCGTCTGGCCTAAAGTGTCCTCTGGATATTGCGAAAGAATTCGAAGGTCTCTCTGTTCAAAGGAATAGAAACAAACACTCTGATGATAGTGGTTATTGGAAGGAGAAGGAAGAAGATTCCGACGAGAGTCCAACTAGTGTGATTGAGGATTCTGGTGAAGTCCAGAGGTTTTCTCTGCCGAAGAGTATATCTGTTCGTTCTAATGGATACTTGAAGACGGCTCCAGCAGCTGCAACTAGCACTGCAGCACGGGCCAAAGGCACCACCAATCGGCCACCTCGAACCTCCAGTCCACCAAATATTCTTGCTCAAAAGGTGTATGTGGGAGGAGGGCAGAAGGAGGAGCCTCTTGAGATGGTGGTGTACAACCAAGGTATGAATAAGACCGAGCTATGCAACAAGTGGCAGGAGACTGGGACATGCCCTTATGGAGGCCAGTGCCAATTTGCTCATGGCATTGAGGAGCTTCGCCCAGTTATCCGACACCCGCGTTACAAGACTGAAGCATGCAGGATGGTTCTTGCCGGAGTTGTCTGCCCATATGGTCATCGATGCCACTTCAGGCATGCTATCTCTGACCTTGAAAAAGCTATAGCTCATCAGCCGGTCACTCCTAGCAGGGCAAACAAGTTTGATAAATAG 1062 0.4765 MHNGDALSTSVTGAGGHGSCQYQPKCDVFGSLYSSLFFDKQLGFDVPISSFEESSDTDYLFSSSLVPKQPVYDSCAVQKNQDLINGHALCLSHLRETTKEAEALRRENTHLRTVNQELNNQLTFSIKARLNNQHYLLDGSSSGLKCPLDIAKEFEGLSVQRNRNKHSDDSGYWKEKEEDSDESPTSVIEDSGEVQRFSLPKSISVRSNGYLKTAPAAATSTAARAKGTTNRPPRTSSPPNILAQKVYVGGGQKEEPLEMVVYNQGMNKTELCNKWQETGTCPYGGQCQFAHGIEELRPVIRHPRYKTEACRMVLAGVVCPYGHRCHFRHAISDLEKAIAHQPVTPSRANKFDK* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte14g00036 353 FunFam Zinc finger protein 36, C3H1 type-like 1 300 336 - -
Pte14g00036 353 PANTHER CCCH ZINC FINGER/TIS11-RELATED 86 338 IPR045877 GO:0003729
Pte14g00036 353 Gene3D - 262 299 - -
Pte14g00036 353 Gene3D - 300 337 - -
Pte14g00036 353 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 268 292 IPR000571 GO:0046872
Pte14g00036 353 SUPERFAMILY CCCH zinc finger 264 298 IPR036855 GO:0046872
Pte14g00036 353 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Pte14g00036 353 SMART c3hfinal6 266 293 IPR000571 GO:0046872
Pte14g00036 353 MobiDBLite consensus disorder prediction 215 240 - -
Pte14g00036 353 Coils Coil 94 121 - -
Pte14g00036 353 SUPERFAMILY CCCH zinc finger 300 335 IPR036855 GO:0046872
Pte14g00036 353 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
Pte14g00036 353 MobiDBLite consensus disorder prediction 222 240 - -
Pte14g00036 353 MobiDBLite consensus disorder prediction 161 181 - -
Pte14g00036 353 FunFam zinc finger CCCH domain-containing protein 15-like 260 299 - -
Pte14g00036 353 ProSiteProfiles Zinc finger C3H1-type profile. 266 294 IPR000571 GO:0046872
Pte14g00036 353 MobiDBLite consensus disorder prediction 161 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte14g00036 Pte-Chr14 2368607 2370427 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte14g00036 77 339 C3H Transcription Factor Family AT1G68200 50.186 5.99e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte14g00036 zf-CCCH 2.1e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte14g00036 K18753 - qsa:O6P43_025764 333.183