Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g02175 ATGTCGAAGCTTACATTGTTAGCTTGTGTGGTTTGGATGGTGTATTTCTGTTCTGAATTACTAGTCACAACTTGCCAACAGGTGAAGGTGAAGCTTGATGCCGAGTCAACCTTGAAGATTCTTCTGGAAGTGAAGAGATCATTTTCGGAAGACCCAGAAAATGTCCTGCAAGACTGGTCAGAGAGCAACAAGAACTTCTGCAATTGGAGAGGGATATCCTGTGGATTGGAATCAGTTCAAGTGGTGGGACTCAACCTCTCTGACTCATCACTCACTGGATCAATCTCACCATCACTCGGCCTTCTGCAAAACCTGCTCCACCTTGATCTCTCTTCCAACAGCCTCACCGGTCCCATCCCACCTAACATCGCCAACCTTACTTCATTGGAATCTCTGCTACTCTTCTCTAACCAACTCACAGGCCCCATCCCCACTCAGCTTGGCTCACTCACCAGTCTCAGAGTCCTTCGAGTAGGAGACAACGGACTCACCGGTTCCATTCCGACCACTTTCGGCAACCTTGACAACTTGGTCAGTCTTGGTCTGGCCTCATGTTGTCTAACAGGTCCTATTCCATCACAATTGGGACAACTCAACCAAATTGAAAATCTTATACTGCAAGACAATGAACTAGAGGGTCCTATTCCATTGGAGCTGTCAAACTGTTCAAGCCTCACTATCGTCACCATGGCTAACAATAAGCTAAACGGGTCGATTCCTAAGGAGTTCGGTCGTCTGAAGAATCTTCAACTTCTTAATATTGCCAATAACAGTATCTCAGGTGAGATACCTAGTGAACTCAGCGAACTGAGGGAGCTTGCCTATTTGAACTTGATGGGAAACCAGATTGATGGTATCATCCCCAGATCTTTAGCTCAATTGGGTAACCTTCAAAATCTTGACTTGTCAATGAACAATCTCCATGGTGGAATCCCAGATGAACTAGGCAACATGGGAGAACTGTTATATCTGGTTCTGTCATTCAACAACCTATCTGGAATTATACCAAGAAACTTATGTGCCAACACAAGCTTGGAGCAGTTGTTCTTATCAAATAGCAGACTTTTTGGTGAAATACCAGCTGAACTGAATCACTGCCATGCACTGAAGCAGCTTGACTTGTCAAACAATGATCTCAATGGATCAATACCAGTTGAGCTGTATGATATGGTTGAGCTAACTGATCTCTTGCTCCACAACAACAGTTTGGTTGGTTCTATCTCCCCATTTGTAGGAAACCTCAGCAACCTCACTACACTAGCATTGTTCCATAACGATATACAGGGCACTCTGCCTAGAGAGATCGGTATGCTTGAGAAGCTTGAGATTATATATCTCTATGATAATCAGCTGTCTGGAGAGATCCCTATGGAGATAGGCAACTGCACAAGCTTGCAAATGATTGATTTCTTTGGCAACCATTTCAGCGGGGAGATTCCTATCACTATTGGAAGGATCAAAGAGCTGATTCTGCTTCACCTTAGGCAGAATGAATTGGAGGGTAGAATTCCCGCCACGTTGGGTAACTGTCACAAACTGAAGACCCTGGATTTGGCAGACAACAATCTCTCAGGGGGAATTCCTGCCACTTTGGGGTCCATAGGATCATCATTGGAACAGCTGATGCTTTACAACAACTCCCTTGAAGGTACTCTCCCTCCACAACTGATTAATCTATCAAACTTGACAAGGATCAATTTATCTCAAAACAGATTGAATGGCAGCATTGCTGCATTGTGTGGCTCGCATTCGTTTCTATCCTTTGACGTTTCAGACAATGAATTTGATCAGGGGATTCCGTCCCAGCTTGGTAATTCTCCTTTACTTGAAAGGCTGAGGTTAGGTAACAACCAATTCATCGGAAAAATACCAACAACATTGGGGAAAATTCGTGAGCTATCCTTGTTAGACATCTCAGGAAATTCAATCACTGGATCAATACCAGCTGAGCTTTCCATGTGCAAGAAACTGACTCACATTGATTTGAACAATAACCTTTTATCCGGAGCAACACCTGCCTGGTTCGGGAGATTGCCACTTGTAGGAGAGATCAAGCTCTCCTTCAATATGTTATCGGGGCCTCTTCCGAAACAGCTATTCAACTGTTCCAAACTGTTGGTGCTTTCCTTGAATGACAACGCTCTTAATGGAAGCATTCCAGCTGATATCGTTTATCTGTCATCCCTTAATGTCCTCAACCTTGCTAACAATCAATTTTCGGGGCCAATCCCCTCTACTCTAGGTCGTCTAAGCATGCTTTATGAGCTTCGGCTTTCTGGAAATAGGATCAATGGGGAAATCCCTAATGAGCTTGGGAAACTCCAGAATCTCCAAAGCATTTTAGACCTCAGTAACAACAATTTGTCCGGTCAAATCCCAGCTGGAATCGCTTCCTTGTCCATGCTCGAAGTTCTTGATCTTTCGCACAATAAACTCAGTGGTCATGTCCCTTCCCAGATAGCGGACATGAGCAGCTTGGGAAAGCTCAATCTCTCTTACAATGCCTTCCAAGGAAAGTTGGACAAGCGGCTCTCCAAGTGGCCGGCTTCAGTGTTTGAAGGGAATCAACTACTTTGTGGAAGCCCTCTTGTCCACTGTGCCATCAACAAGCAGCCAGGCTTAAGTAATTCATCAATTGTGGCGATCTCTTCCATTTCAACCTTGGTTGCAATTGCTCTATTGATATGTGGCATGACACTCATCTTGAAGAGTAGGCGAGAACTTTTCAGAAGAGGCAGTAGCCAAGTGAAGTACATATATTCCAGCTCTTCTTCCTCTCAAGCTCAGCAAAGGCCTCTATTCCAATTCATTGCAGGTGGAAAGAGAGATTTCAAGTGGGATGACATAATGGAGGCCACACACAACCTAAGCAATGACTTCATCATCGGCTCTGGTGGTTCCGGGACAATCTACAAAGCAGAACTTCCCTCAGGAGAAATAGTAGCAGTCAAGAAGATCTCGTGGAAAGATGACTATTTGCTAAACAAAAGTTTCACGAGGGAAGTGAAGACGCTGGGAAGAATTCGGCATAGACATCTGGTGAAGTTGCTGGGGTATTGCAGCAACAGAATTAGAGGAACAGGCTGGAATCTGTTGATCTATGACTTCATGGAAAATGGAAGTGTATGGGACTGGCTCCATGCCATGGACATGGTGAGATGGGTGGAGACACACATTGAAATGCAAGGGTCTAATCGTGAGGAGTTAATAGATTCTGAACTGAAACCCCTTTTGCCTTGTGATGAGTCTGCAGCATTCCACGTGCTCGAAATAGCTCTGCAGTGCACGAAAACTAGTCCAAAGGAGAGGCCATCGTCACGCCAAGTTTGTGATCAGCTCGTACATTTGTGTAAAAGTAAAGTGCTTGACAAGACCTATGTTGTATCATGTACATGA 3396 0.4452 MSKLTLLACVVWMVYFCSELLVTTCQQVKVKLDAESTLKILLEVKRSFSEDPENVLQDWSESNKNFCNWRGISCGLESVQVVGLNLSDSSLTGSISPSLGLLQNLLHLDLSSNSLTGPIPPNIANLTSLESLLLFSNQLTGPIPTQLGSLTSLRVLRVGDNGLTGSIPTTFGNLDNLVSLGLASCCLTGPIPSQLGQLNQIENLILQDNELEGPIPLELSNCSSLTIVTMANNKLNGSIPKEFGRLKNLQLLNIANNSISGEIPSELSELRELAYLNLMGNQIDGIIPRSLAQLGNLQNLDLSMNNLHGGIPDELGNMGELLYLVLSFNNLSGIIPRNLCANTSLEQLFLSNSRLFGEIPAELNHCHALKQLDLSNNDLNGSIPVELYDMVELTDLLLHNNSLVGSISPFVGNLSNLTTLALFHNDIQGTLPREIGMLEKLEIIYLYDNQLSGEIPMEIGNCTSLQMIDFFGNHFSGEIPITIGRIKELILLHLRQNELEGRIPATLGNCHKLKTLDLADNNLSGGIPATLGSIGSSLEQLMLYNNSLEGTLPPQLINLSNLTRINLSQNRLNGSIAALCGSHSFLSFDVSDNEFDQGIPSQLGNSPLLERLRLGNNQFIGKIPTTLGKIRELSLLDISGNSITGSIPAELSMCKKLTHIDLNNNLLSGATPAWFGRLPLVGEIKLSFNMLSGPLPKQLFNCSKLLVLSLNDNALNGSIPADIVYLSSLNVLNLANNQFSGPIPSTLGRLSMLYELRLSGNRINGEIPNELGKLQNLQSILDLSNNNLSGQIPAGIASLSMLEVLDLSHNKLSGHVPSQIADMSSLGKLNLSYNAFQGKLDKRLSKWPASVFEGNQLLCGSPLVHCAINKQPGLSNSSIVAISSISTLVAIALLICGMTLILKSRRELFRRGSSQVKYIYSSSSSSQAQQRPLFQFIAGGKRDFKWDDIMEATHNLSNDFIIGSGGSGTIYKAELPSGEIVAVKKISWKDDYLLNKSFTREVKTLGRIRHRHLVKLLGYCSNRIRGTGWNLLIYDFMENGSVWDWLHAMDMVRWVETHIEMQGSNREELIDSELKPLLPCDESAAFHVLEIALQCTKTSPKERPSSRQVCDQLVHLCKSKVLDKTYVVSCT* 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g02175 1131 Gene3D Ribonuclease Inhibitor 482 581 IPR032675 -
Pte13g02175 1131 Gene3D Ribonuclease Inhibitor 35 191 IPR032675 -
Pte13g02175 1131 Gene3D Ribonuclease Inhibitor 289 385 IPR032675 -
Pte13g02175 1131 Gene3D Ribonuclease Inhibitor 192 288 IPR032675 -
Pte13g02175 1131 PANTHER UNNAMED PRODUCT 17 534 - -
Pte13g02175 1131 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 288 385 - -
Pte13g02175 1131 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 916 1036 - -
Pte13g02175 1131 ProSiteProfiles Protein kinase domain profile. 956 1131 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g02175 1131 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 34 193 - -
Pte13g02175 1131 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 194 287 - -
Pte13g02175 1131 Gene3D Transferase(Phosphotransferase) domain 1 1034 1126 - -
Pte13g02175 1131 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 480 576 - -
Pte13g02175 1131 SUPERFAMILY L domain-like 611 865 - -
Pte13g02175 1131 SMART LRR_typ_2 294 317 IPR003591 -
Pte13g02175 1131 SMART LRR_typ_2 774 798 IPR003591 -
Pte13g02175 1131 SMART LRR_typ_2 726 750 IPR003591 -
Pte13g02175 1131 SMART LRR_typ_2 799 822 IPR003591 -
Pte13g02175 1131 SMART LRR_typ_2 150 173 IPR003591 -
Pte13g02175 1131 SMART LRR_typ_2 318 342 IPR003591 -
Pte13g02175 1131 SMART LRR_typ_2 246 270 IPR003591 -
Pte13g02175 1131 SMART LRR_typ_2 102 126 IPR003591 -
Pte13g02175 1131 SMART LRR_typ_2 414 438 IPR003591 -
Pte13g02175 1131 SMART LRR_typ_2 654 677 IPR003591 -
Pte13g02175 1131 SMART LRR_typ_2 366 390 IPR003591 -
Pte13g02175 1131 SMART LRR_typ_2 559 583 IPR003591 -
Pte13g02175 1131 SMART LRR_typ_2 823 854 IPR003591 -
Pte13g02175 1131 SMART LRR_sd22_2 102 128 - -
Pte13g02175 1131 SMART LRR_sd22_2 246 269 - -
Pte13g02175 1131 SMART LRR_sd22_2 150 176 - -
Pte13g02175 1131 SMART LRR_sd22_2 438 470 - -
Pte13g02175 1131 SMART LRR_sd22_2 294 315 - -
Pte13g02175 1131 SMART LRR_sd22_2 510 540 - -
Pte13g02175 1131 SMART LRR_sd22_2 799 825 - -
Pte13g02175 1131 SUPERFAMILY L domain-like 42 383 - -
Pte13g02175 1131 ProSitePatterns Protein kinases ATP-binding region signature. 962 985 IPR017441 GO:0005524
Pte13g02175 1131 Gene3D Ribonuclease Inhibitor 386 481 IPR032675 -
Pte13g02175 1131 PRINTS Leucine-rich repeat signature 369 382 - -
Pte13g02175 1131 PRINTS Leucine-rich repeat signature 799 812 - -
Pte13g02175 1131 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 577 870 - -
Pte13g02175 1131 SUPERFAMILY RNI-like 286 619 - -
Pte13g02175 1131 Gene3D Phosphorylase Kinase; domain 1 916 1033 - -
Pte13g02175 1131 Pfam Leucine Rich Repeat 104 126 IPR001611 GO:0005515
Pte13g02175 1131 Pfam Leucine Rich Repeat 512 532 IPR001611 GO:0005515
Pte13g02175 1131 SUPERFAMILY Protein kinase-like (PK-like) 935 1052 IPR011009 -
Pte13g02175 1131 FunFam Uncharacterized protein 386 479 - -
Pte13g02175 1131 Pfam Protein kinase domain 961 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte13g02175 1131 Pfam Leucine rich repeat N-terminal domain 39 74 IPR013210 -
Pte13g02175 1131 Gene3D Ribonuclease Inhibitor 582 872 IPR032675 -
Pte13g02175 1131 Pfam Leucine rich repeat 631 691 IPR001611 GO:0005515
Pte13g02175 1131 Pfam Leucine rich repeat 224 283 IPR001611 GO:0005515
Pte13g02175 1131 Pfam Leucine rich repeat 780 835 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g02175 Pte-Chr13 34431035 34434918 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g02175 30 1054 Receptor kinase-like Gene Family AT5G07280 33.364 1.38e-137 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pte13g02175 Pkinase 6.2e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g02175 - - qsa:O6P43_013359 1487.63