Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g02164 ATGGAAGGTGTACCGCACCCAATACCTCGCACAGTGGAGGAGGTGTTCAGTGACTACAAGGGTAGACGTTCCGGCTTGATTAAGGCGCTTACCTCTGATGTTGAGAAGTTTTATCAGCAGTGCGATCCGGAGAAGGAGAATCTGTGCCTTTATGGATTTCCCAGTGAAACTTGGGAAGTCAATTTGCCTGTTGAAGAGGTGCCTCCTGAGCTGCCAGAGCCAGCATTAGGTATTAATTTTGCCAGGGATGGGATGCAAGAAAAGGATTGGCTATCACTGGTTGCTGTTCACAGTGACTCTTGGCTGCTTTCTGTTGCATTCTACTTTGGTGCACGCTTTGGATTTGGTAAAAATGAAAGGAAAAGACTTTTTCAGATGATAAATGATCTTCCTACCATATTTGAAGTAGTGACTGGTGCTAACAAGCAATCTAAGGAATCAGCTATACATAACAATGGTAGCAAATCAAAATCAAGCAGCAAGTCTCGTCAGTCTGAGACTCATGCTCTGGCAGTCAAGATGGCTGGACCTCCCAAAGAAGATGAGAGTGGTGAAGATGAGGCGGAAGATGATGAACAAGGTGCCACCTGCGGAGCCTGTGGAGACAACTATGGGGCTGACGAGTTCTGGATTTGCTGTGATGTGTGTGAAAAATGGTTCCATGGTAAATGTGTAAAGATAACTCCCGCAAAGGCTGAGCATATCAAGCAGTACAAGTGCCCAAGTTGTAGTAATAAAAAGGCTAGAGTTTGA 753 0.4529 MEGVPHPIPRTVEEVFSDYKGRRSGLIKALTSDVEKFYQQCDPEKENLCLYGFPSETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLSVAFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGANKQSKESAIHNNGSKSKSSSKSRQSETHALAVKMAGPPKEDESGEDEAEDDEQGATCGACGDNYGADEFWICCDVCEKWFHGKCVKITPAKAEHIKQYKCPSCSNKKARV* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g02164 250 MobiDBLite consensus disorder prediction 145 167 - -
Pte13g02164 250 PANTHER CPG BINDING PROTEIN 9 249 IPR045104 GO:0006355|GO:0042393
Pte13g02164 250 Pfam PHD-finger 197 246 IPR019787 -
Pte13g02164 250 ProSitePatterns Zinc finger PHD-type signature. 197 243 IPR019786 -
Pte13g02164 250 ProSiteProfiles Zinc finger PHD-type profile. 194 246 IPR019787 -
Pte13g02164 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 245 IPR013083 -
Pte13g02164 250 SMART PHD_3 196 244 IPR001965 -
Pte13g02164 250 FunFam PHD finger alfin-like protein 189 245 - -
Pte13g02164 250 MobiDBLite consensus disorder prediction 145 192 - -
Pte13g02164 250 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Pte13g02164 250 SUPERFAMILY FYVE/PHD zinc finger 186 247 IPR011011 -
Pte13g02164 250 CDD PHD_AL_plant 197 246 IPR044104 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g02164 Pte-Chr13 34350657 34355539 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g02164 1 247 Alfin-like Transcription Factor Family AT1G14510 80.242 4.55e-134 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Pte13g02164 Alfin 3.6e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g02164 K26274 - gmx:100170698 435.261