Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g02150 ATGGCCGACGAACCAATGCCTACTCGTTGGTCATTTCAGGATTTTAAATTGCTTTATGATGCGAAGTTTGGAAGGAAGAAACTTACAGGGACAGAAAATGGGAAGGCTGGTGATATGGCAGTCAGAGATGTTGCATCAAACGGGAAGGTGCATGTTAACAGCACATCTGAAATGGCCATATATGAGCAGTTCAGGAATCAGGGGCAGAGCTGGATACATTCCAATGGGGTTTCATCGAATCATACGCACGAAACACCGCAGAAGCCGTTGCTTCCTGCATTTGAATCTGCAGAAATGCGAGCCTTGGGAGAGAGTCTAAGCAGAGATATAGTTCGTGGGAATCCAGATGTTAAATGGGAAAGCATCAAAGGATTAGAAAAAGCCAAAAGCTTACTGAAAGAGGCTGTTGTCATGCCAATTAAATATCCAAAGTATTTTACTGGTTTGCTATCACCATGGAAAGGCATTCTTCTCTTTGGCCCTCCTGGGACCGGGAAGACTATGCTTGCAAAGGCAGTTGCAACTGAGTGCAAGACCACATTTTTTAATATTTCTGCCTCGTCTGTTGTCAGCAAGTGGCGAGGTGATTCTGAAAAGTTAGTGAAAGTGCTATTCGAGCTTGCCAGACATCATGCACCCTCAACAATATTTATTGATGAAATTGATGCTATTATTAGTCAACGAGGTGAAGGAAGAAGTGAACATGAAGCTAGCAGGCGATTAAAAACTGAGCTACTTATACAGATGGACGGACTGACGCGGTCTGAGGAACTTGTTTTTGTGTTGGCAGCAACGAATCTCCCATGGGAATTGGATGCAGCTATGCTTCGACGTCTTGAAAAACGAATTCTTGTACCTCTTCCAGAGCCAGAGGCAAGAATAGCTATGTTTGAGGAATTGCTTCCACCTCAGCCTGGTGAGGAGAAACTTCCTTATGATTTGTTAGTGGAAAAGACAGAAGGGTATTCGGGTTCAGATATTAGGTTACTTTGCAAAGAAGCTGCCATGCAGCCCTTAAGACGCTTAATGGCTGTACTTGAACAAAGGCAGGACATGGTGCCCGGAGAAGAGCTTCCAAAAGTAGGGCCGATCAGCCATGAAGATATCGAGGTAGCATTAAAGAACACTAGGCCATCAGCACATCTTCACGCTCCTCGCTATGACAAGTTCAATGCTGATTATGGTAGCCAAATACTCTAA 1200 0.4425 MADEPMPTRWSFQDFKLLYDAKFGRKKLTGTENGKAGDMAVRDVASNGKVHVNSTSEMAIYEQFRNQGQSWIHSNGVSSNHTHETPQKPLLPAFESAEMRALGESLSRDIVRGNPDVKWESIKGLEKAKSLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLVKVLFELARHHAPSTIFIDEIDAIISQRGEGRSEHEASRRLKTELLIQMDGLTRSEELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARIAMFEELLPPQPGEEKLPYDLLVEKTEGYSGSDIRLLCKEAAMQPLRRLMAVLEQRQDMVPGEELPKVGPISHEDIEVALKNTRPSAHLHAPRYDKFNADYGSQIL* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g02150 399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 380 IPR027417 -
Pte13g02150 399 CDD RecA-like_VPS4-like 122 285 - -
Pte13g02150 399 SMART AAA_5 152 289 IPR003593 GO:0016887
Pte13g02150 399 FunFam Katanin p60 ATPase-containing subunit A-like 2 115 299 - -
Pte13g02150 399 PANTHER AAA DOMAIN-CONTAINING 73 396 - -
Pte13g02150 399 FunFam Katanin p60 ATPase-containing subunit A-like 2 288 376 - -
Pte13g02150 399 Gene3D - 288 376 - -
Pte13g02150 399 Gene3D - 115 389 IPR027417 -
Pte13g02150 399 Pfam AAA+ lid domain 313 348 IPR041569 -
Pte13g02150 399 Pfam ATPase family associated with various cellular activities (AAA) 156 286 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g02150 Pte-Chr13 34128049 34137183 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g02150 114 359 Calmodulin-binding Proteins AT3G56690 32.530 3.51e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g02150 K07767 - qsa:O6P43_012974 672.93