LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte13g02114	ATGGAAAAGGAACCACTTTTGCAACCTCCAACCTCATTAAGGAGACCTCCATCGTTGCCACCCCACTTATTAAAACGTACAGAGCAGGACGAATTTACTATACCTATGACACCTTCGGAGTTGAAAGAGCGTCTTATATTTGGTCCTTCTCCTTCAGCACAGGATAATTCTCCGTTTGTTGAAGCTTTGAATCTATCTATCAACACTCCAAGTCCCTCAATTTCTTATACTCCACAAGAGTCGCCATTCCGACCAGAGTTGCCAAATCAGATAGCTGATCCTAATTTTTCTTGGCACAAAACTAATCTTCATCGTTCCAAAACTGCTCCTGCAATGGCTGTGATCAAAGATACCAGCCCACATTCCCCTGGGATTAGACCCGATCACTCTCAATCAATGGTCCGCCAAGGTTTCATTCTTCTTGTGGTTTATTTGTCATTAGGCGTGGTTATATTTTGGGTAAATCGCAATGAATTTTCTGGATCAGAGACACATCCTGTTGTGGATGCATTGTACTTCTGTATAGTTACAATGTGTACAATTGGATATGGGGACATAACGCCAACAACTGCAGCAACGAAGTTATTTTCCATTATGTTTGTGTTGGTTGGTTTTGGATTTATTGACATTTTGCTTAGCGGAATGGTTTGCTATGTACTTGATTTACAAGAGAATTACCTTTTGAGAACTGTGAAGGAGTCCCGCATAATTGATGTGAAGAAAGGGAGAATGAGAATTAGAATGAAAGTGGCACTGGCTCTGGGAGTTGTTGTTCTTTGTATTGGAATGGGGGTGGGTGTCATGCATTTTGTGGAGCACTTTGGATGGTTGGATTCCTTTTATTTTTCGGTCATGTCAGTTACCACTGTCGGTTATGGCGATCGAACCTTCAAGTCAACACCTGGACGAATTTTCGCCTCGATTTGGTTGCTTGTATCGACACTGGCAGTGGCTCGAGCTTTCCTTTATTTTGCTGAGGCAAGAGTTGATAAGCGCCATAGGAGAATGGCAAAGTGGATCCTTGATCAGAATCTTACCGTTTCTGAATTTCTTGCTGCAGACATTGACCACAATGGCTGTGTAAGCAAGTCAGAATATGTCATATACAAACTTAAGGAGATGGGTAAAATAGCAGAGAAAGATATCATGACGATATGCAAGAATTTTGATAGATTGGACAGTGGCAATTGTGGCAAGATTACTCTTTCTGATCTCAAGGAGAATCAATAG	1230	0.4146	MEKEPLLQPPTSLRRPPSLPPHLLKRTEQDEFTIPMTPSELKERLIFGPSPSAQDNSPFVEALNLSINTPSPSISYTPQESPFRPELPNQIADPNFSWHKTNLHRSKTAPAMAVIKDTSPHSPGIRPDHSQSMVRQGFILLVVYLSLGVVIFWVNRNEFSGSETHPVVDALYFCIVTMCTIGYGDITPTTAATKLFSIMFVLVGFGFIDILLSGMVCYVLDLQENYLLRTVKESRIIDVKKGRMRIRMKVALALGVVVLCIGMGVGVMHFVEHFGWLDSFYFSVMSVTTVGYGDRTFKSTPGRIFASIWLLVSTLAVARAFLYFAEARVDKRHRRMAKWILDQNLTVSEFLAADIDHNGCVSKSEYVIYKLKEMGKIAEKDIMTICKNFDRLDSGNCGKITLSDLKENQ*	410

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte13g02114	409	Gene3D	-	131	229	-	-
	Pte13g02114	409	Pfam	Ion channel	139	214	IPR013099	-
	Pte13g02114	409	Pfam	Ion channel	256	326	IPR013099	-
	Pte13g02114	409	SUPERFAMILY	Voltage-gated potassium channels	226	347	-	-
	Pte13g02114	409	PRINTS	Two pore domain K+ channel signature	176	204	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Pte13g02114	409	PRINTS	Two pore domain K+ channel signature	288	297	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Pte13g02114	409	PANTHER	POTASSIUM CHANNEL, SUBFAMILY K	138	383	IPR003280	GO:0005267\|GO:0016020\|GO:0071805
	Pte13g02114	409	MobiDBLite	consensus disorder prediction	1	32	-	-
	Pte13g02114	409	SUPERFAMILY	EF-hand	343	407	IPR011992	-
	Pte13g02114	409	FunFam	Two-pore potassium channel 3	233	347	-	-
	Pte13g02114	409	SUPERFAMILY	Voltage-gated potassium channels	133	216	-	-
	Pte13g02114	409	Gene3D	-	231	347	-	-
	Pte13g02114	409	ProSitePatterns	EF-hand calcium-binding domain.	354	366	IPR018247	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte13g02114	Pte-Chr13	33783050	33784713	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte13g02114	4	408	Ion Channels	AT4G18160	61.839	1.10e-172	488

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte13g02114	K05389		-	zju:107413690	575.089