Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g02098 ATGGCTTCGGCGTCGATATTCTCATCGTTAAGGAGGAGAAGGTCGCCTTCTTTGGAAGCTTTTCTGGCTCCGGTTGACCTGACTGGTGTTGCCCTGGTTCAAACCCTGGTAGCTGTTTCTTCTGAACTTATTTCTCGCTTTGCAGACCGGTTTTTCTTCTTTCAGAGGAAGAATTCAAGGTCGCTCATAAGGAAAGTTGAGATTTTTTTGTTGCTTTTGGAGAATTTGAGCGATACGAGTCCGAATTTGCCTCCAACTGCGATGCTTTGCTTGAAGGAGATGTATTTACTGTTGTATCGGTCTAAGATTCTTCTTGATTATTGTGCAAAGTCAAGTAAGGTATGGCTCTTGCTTCAGAATCATTCGATTTCTGGTCATTTTCATGATCTGAATCAAGAGATATCCACACTTTTAGATGTATTTCCAATTAAGGATGTTGAATTGAGTGTGGATGTCATGGAACAAATTGAACTATTGAAGAAACAGTCAAGGAGGTCTATGCTGTTTGTTGATAGAAATGATGAACTGCTGAGAATTCAGTTTTTCTCATTTCTTGGTGAATTTGAAAATGGCCGTGTTCCTAGTACGGGTGAATTAAAGTCTTTCTTTATTGAGCAGTTGGGGATTCAGGATGCTAAGAGTTGCAGGAAAGAAATTGAGTCTTTGGAAGAGCAGATTGTTTATCATGAGGGAGATGTTGAACCTACAATCTCAGTGCTTAACGGTTTTGTTGCATTGACAAGGTACTGCAGATTTTTGCTTTTCGGGTTTGAGGGAGACAAACTAGAATTGCAAACTTCAAATCAAAAGAGATCTAAAATGGGATTGATTACTCAACAAATTGCAGAGACATTTTTTACTATTCCAAGTGATTTTTGCTGCCCAATATCTTTGGAATTGATGCAAGATCCAGTGATAATATCAACAGGGCAGACATTTGAAAGGAGTTCCATAGCTCGATGGATGGAAGAAGGGCATTGTACTTGCCCCAAAACAGGGCAAATGCTTGCCAATACACGTCTTGTCCCCAATCGTGCACTCAGGAATCTGATCATGCAGTGGTGCACTGCACACGAGATTCCCTATGATCCACCTGAGAGCATGGATGCATCGGCTGAGACCTTTGCTACAGCTTCCCCCACAAAAGCTGCCCTTGAAGCAAATAAAGCCACAGCAATTCTTCTCATTCAACAACTAGCAATTGGATCAGAAGTTGGGAAGGCTATTGCTGCTCGTGAAATAAGATTGCTTGCAAAAACCGGGAAAGAAAACCGTGCCTTCATAGCAGAAGCTGGAGCCATTCCCCATCTCCGTGAATTGCTTCCATCTGCGAATCCTATTGCACAGGAGAATTCTGTGACTGCAATGCTTAATTTATCGATTTTTGAGAAAAACAAAAGTCTCATCATGCAAGAGGAAGGTTGTTTAGGATCAATTGTGGATGTCCTGAGATTTGGTCACACAACAGAAGCAAGGGAAAATGCTGCGGCAACATTGTTTAGCCTCTCTGCTGTTCATGACTATAAGAAGGTAATTGCAGACGAGAACGGAGCCATTGAATCCTTGACAGGACTATTGGCAGAGGGAACCCCAAGAGGGAAGAAGGATGCTGTTACTGCTTTATTTAATTTGTCAACACATAGTGAAAATTGTCTAAGAATTATAGAGGCAGGAGCTGTAACTGCACTTGTTGGGGCTTTAGGAAATGAAGACATTTCCGAGGAAGCAGCTGGTGCATTAGCCTTGATTGTCAGGCAGCCAATTGGGGCCATAGCAGTGGTGAGGGAGGAAATGGCCGTAGCTGGTTTGATAGGAATGATGGGATGTGGTACACCAAGGGGAAAAGAAAATGCTGTTGCAGCTTTGCTTGAGTTATGCCGGAGTGGTGGAGCAGCAGCAACTGAAACAGTGGTTAGGGCACCAGCTTTGGCTGGTTTGCTCCAAACACTTCTATTTACAGGCACAAAGCGGGCTAGGCGAAAAGCAGCTTCACTCGCAAGGGTGTTTCAGAGGTCGGAGCTGACATCTTTGCATTTTGGTGGATTAGGAATGGGGTATGCATTTGCTAGTAACTCAAATACAAATAGAGACACCAGCTTTGCTGGAGATGTTTCAGTACCAATGTCCATTTCTGTACACGTTTTGTAG 2148 0.4297 MASASIFSSLRRRRSPSLEAFLAPVDLTGVALVQTLVAVSSELISRFADRFFFFQRKNSRSLIRKVEIFLLLLENLSDTSPNLPPTAMLCLKEMYLLLYRSKILLDYCAKSSKVWLLLQNHSISGHFHDLNQEISTLLDVFPIKDVELSVDVMEQIELLKKQSRRSMLFVDRNDELLRIQFFSFLGEFENGRVPSTGELKSFFIEQLGIQDAKSCRKEIESLEEQIVYHEGDVEPTISVLNGFVALTRYCRFLLFGFEGDKLELQTSNQKRSKMGLITQQIAETFFTIPSDFCCPISLELMQDPVIISTGQTFERSSIARWMEEGHCTCPKTGQMLANTRLVPNRALRNLIMQWCTAHEIPYDPPESMDASAETFATASPTKAALEANKATAILLIQQLAIGSEVGKAIAAREIRLLAKTGKENRAFIAEAGAIPHLRELLPSANPIAQENSVTAMLNLSIFEKNKSLIMQEEGCLGSIVDVLRFGHTTEARENAAATLFSLSAVHDYKKVIADENGAIESLTGLLAEGTPRGKKDAVTALFNLSTHSENCLRIIEAGAVTALVGALGNEDISEEAAGALALIVRQPIGAIAVVREEMAVAGLIGMMGCGTPRGKENAVAALLELCRSGGAAATETVVRAPALAGLLQTLLFTGTKRARRKAASLARVFQRSELTSLHFGGLGMGYAFASNSNTNRDTSFAGDVSVPMSISVHVL* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g02098 715 Gene3D - 549 673 IPR011989 -
Pte13g02098 715 PANTHER U BOX DOMAIN-CONTAINING 58 669 - -
Pte13g02098 715 FunFam RING-type E3 ubiquitin transferase 364 686 - -
Pte13g02098 715 FunFam RING-type E3 ubiquitin transferase 287 362 - -
Pte13g02098 715 SMART arm_5 462 504 IPR000225 GO:0005515
Pte13g02098 715 SMART arm_5 505 546 IPR000225 GO:0005515
Pte13g02098 715 SMART arm_5 586 627 IPR000225 GO:0005515
Pte13g02098 715 SMART arm_5 547 585 IPR000225 GO:0005515
Pte13g02098 715 SMART arm_5 421 461 IPR000225 GO:0005515
Pte13g02098 715 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515
Pte13g02098 715 SUPERFAMILY ARM repeat 395 669 IPR016024 -
Pte13g02098 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
Pte13g02098 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 362 IPR013083 -
Pte13g02098 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
Pte13g02098 715 Gene3D - 54 144 IPR036537 GO:0007166
Pte13g02098 715 Pfam U-box domain 288 359 IPR003613 GO:0004842|GO:0016567
Pte13g02098 715 SUPERFAMILY RING/U-box 275 362 - -
Pte13g02098 715 SMART Ubox_2 291 354 IPR003613 GO:0004842|GO:0016567
Pte13g02098 715 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842|GO:0016567
Pte13g02098 715 Gene3D - 372 548 IPR011989 -
Pte13g02098 715 CDD RING-Ubox_PUB 289 341 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g02098 Pte-Chr13 33642209 33644767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g02098 1 714 U-box Gene Family AT1G29340 67.579 0.0 922
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g02098 - - mnt:21388341 1095.88