Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g02096 ATGACTAGAGCTGTTCGTAATAGGATACTCAAGGATGCGAATGGTGATATTAGTGATCATCTACGCAACCATATCCATTTGACAAATTGTATTCACCTAAAGAATCATATGCACAAACACAGTCCTATACTGGCCAACAGGTCATTCATGAGGGACTTGGTTGTCCTTCAGAGGTCACGGTCTCTAAGGGATCCTTCTGCAAGTCCTCCATCATGGCACTCACCTTCCATAATAGATATGCTTTCCAAGAGAGCTGAAAATGATGTTGTTCAGGGGGAAAGAAAGTCGGCAGGCATTGAGCGACGGAAAGATGGAAGGAGATCGTCAGGGAGCTCACCTCCTTTTGTTAATTTAGGCCCATCAAAAGTAGTTCCTGGTGAACTTTCCAGGGATAATACAAAAGGCAATGCAGCAGCCAGCGAAAATAGTAGCAGGAGTGGACTTGGGGATAGTAAAAAAGTTGGGAGAGAAGAATCTGGTAGGAGGAGTAACAGGACTAACATTGTGGGCACTAGTAAGGAAACTCATTTCAGTCAAGAAGGTAAAGATTCAATCCAAGAATCATTCTCAGGGCACTCCGTGTCTAAAGACAGAAAGAGTAGACAAAGAGGCAAGCAAATCCACCACGGTCAAACTAAGAACCTTTCTCAGCAGAAATTGCACGATGTTCCAAGTGACAGTGATGGTGTGATATCTTCAAACATACATATTCGTGACAGGTTTCCTCCACATGGAAAAGCTGTTGAGGAGCCAGAAGGAGGAAGTGTTCGCGGTAAATGCACTGGATTAGGTAGGGGGAAAAGGCGCAAGTTCCGAAGTGTTCGAAGAGCTCGAACTGCTACATCAACAGATATTGGAGCAGAGAATGAATTGTCTGTGGCTTCTAACTCATTTGCTCCAGGGTCTGCCCATCATAAGTATCAAATCGAGGTGGTGGAAGAAGGTTATTCTGACCGAAATGTCAGAAATGCGCCGAGAAATGGTTGTGGTCTTCCTTGGAATTGGTCAAGAATTCATGACAGGGGAAAAACATTCCTTGACAAAGCTGGAAGAAGCTTCTCTTGCGGGTTGTCTGATTCAAGGTTAAAGCGATGTAGCATTGCCGCCAATGGGAAAAACATGTCTGAAATGCCAGTGGCCTCTGACCACTCTGGTTCATCAACTAAATCTGATGCAGAGGCAATGCCTCTGCTAATTGAGGCATCTGGATCTCATGAAAGTACTGAAAATGTAGGATGGGCTCATGATTACTCTGGGGAACTTGGAATATATGCTGATAATTTATTGAAGGATGATATTGATTCTGACTTAGCTTCTGAAGGTAGGTCTGGAGATCATGATAAATTTATATCAAATGGCCATAGTAGACACCAAAACCTGACCCAAAAGTACATGCCAAAAACTTTTAGAGATATGGTAGGACAGAATTTGGTTGTTCAAGCTCTTGCTAATGCAGTAATGAGAAGGAAGGTTGGTTTGTTATATGTGTTCTATGGACCCCATGGCACTGGAAAAACATCATGTGCTCGCATATTTGCCAGAGCTCTGAATTGTCAATCTTCAGAACATCCCAAACCTTGCGGCTTTTGCAATTCTTGCATTGCATATGATTTGGGTAAGAACAGAAATATTAGAGAAGTTGGACCAGTCAGCAATTTTGACTTTGAGAACATCATGGATTTGCTAGATAACATGATAGTTTCCCATCTCCCGGCACAGTACAGAGTTTTTATTTTTGATGATTGTGATACTCTGTCGCCTGATAGCTGGAGTGCCATTTCAAAGGTCATAGATAGAGCACCTAGACGTTTGGTTTTTATCTTTGTCAGTTCAAGTCTTGATGTCTTGCCTCATATAATAATATCCAGGTGCCAGAAATTCTTCATTCCTAAGCTTAAGGACGCAGATATCATATACACTTTGCAGTGGATTGCATCAAAAGAGGGGCTTGAAATTGATAAGGAAGCCTTGAAACTCATTGCATCAAGATCAGATGGATCTTTAAGGGATGCAGAGATGACCCTTGAACAACTGAGTTTACTCGGGCAGAGAATATCTGTGCCTTTAGTACAGGAATTGGTAGGGCTAATCTCCGATGAAAAATTGGTGGATCTCCTTGATTTGGCATTATCTGCTGACACGGTTAACACTGTAAAGAACTTGAGGGTGATAATGGAAACTGGTGTTGAGCCATTAGCTCTGATGTCACAACTTGCTACAGTGATTACTGATATACTAGCTGGTAGCTATGATTTCACAAAAGAAAGGCAGAGAAGGAAGTTTTTCCGCAGGCAGCCATTATCCAAGGAAGATATGGAAAAGCTCCGACAAGCTCTGAAAACTTTGTCAGAGGCTGAAAAGCAACTAAGGATGTCAAATGACAAATTGACATGGCTAACAGCTGCATTGCTTCAACTGGCTCCTGATCAGCAATATTTGTTGCCTACTTCATCTGATAATAGCTTTAATCATAGCCCCTTGCCCCTAAATAGTGCAGCTCAAAGAGATGTATCTCGTAGGAGCAGTAGTCATGCTCAGCTTCCAGATAGAGATAAGCAACTGCCAAAAGATGCTAGGACAGGATCTTTTTATGCAGGAAGGGCGGACAATGATATGATGAAAGGCTTCATCTCAGAGAAAAAAGGACATGCTAGCACGGATATTGCTCCCCAAAAGACGCCACTGCATACTGGAACTATGAACAAAGCAGGTGAGAGGAAGGACTCTGGTACTTATAGAGGAATTGAAGAGATTTGGTTGGAAGTCCTGGGGAAGATTCAAGTTAATGGTTTGAAAGAGTTTTTATATCAAGAGGGGAATCTGATCTCAGTCAGTTTTGGGGCAGCTCCGACTGTGCAGTTGATGTTTAATACACAACAAGCTAAAGCCATGGCGGAGAAGTTTAGGAGCCTTATCTTGCAGTCATTTGAATCTGTTCTCGGGTCTTCACTTACAATAGAAATCAGATGTGATCCAAACAATAACAAAGGTGGTGGTCGAGTACCTCTAATCTTGCCAGCCGGTAAAGATAGCACGTCTAGGATTGGAGACGAAAGCTTGCATGTGGACTCTCATAAAAGGGACACTGGTGAGATTGAAGAAGTAGGTATGTCACAGGTTGCCGTCCATGCTGGATCCTGTATGAGAAGTGTAGATGGTGTTGGTATTGAGCAACGAGCCACTTCTGAGAAGAAACCGACCATGACCTCCATCCCAGAAGGAACAAAATTGAGGGACCGTACTCAGAGTCAGAGCCTTGTAAGAAGTAAGGTGTCCCTTGCACATGTTATTCAGCAGGCAGAAGGATGTACACAGCGAAATAGTTGGTCCAAGCGCAAAGCAGTTTCTATTGCTGAAAAGCTTGAACAAGAAAACTTGAGACTGGAGTCAAGATCAAGGAGCTTACTTTGCTGGAGAGCATCCAGGGTAACGCGTAGGAAGCTTTCAAGATTAAAAATTAGGACTCGAAAACCACATAAATTGTTGAAGCTTGTGTCGTGTGGGAGATGTCTTTCCACCAAGTCTCCAAGGTAG 3534 0.4287 MTRAVRNRILKDANGDISDHLRNHIHLTNCIHLKNHMHKHSPILANRSFMRDLVVLQRSRSLRDPSASPPSWHSPSIIDMLSKRAENDVVQGERKSAGIERRKDGRRSSGSSPPFVNLGPSKVVPGELSRDNTKGNAAASENSSRSGLGDSKKVGREESGRRSNRTNIVGTSKETHFSQEGKDSIQESFSGHSVSKDRKSRQRGKQIHHGQTKNLSQQKLHDVPSDSDGVISSNIHIRDRFPPHGKAVEEPEGGSVRGKCTGLGRGKRRKFRSVRRARTATSTDIGAENELSVASNSFAPGSAHHKYQIEVVEEGYSDRNVRNAPRNGCGLPWNWSRIHDRGKTFLDKAGRSFSCGLSDSRLKRCSIAANGKNMSEMPVASDHSGSSTKSDAEAMPLLIEASGSHESTENVGWAHDYSGELGIYADNLLKDDIDSDLASEGRSGDHDKFISNGHSRHQNLTQKYMPKTFRDMVGQNLVVQALANAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSSEHPKPCGFCNSCIAYDLGKNRNIREVGPVSNFDFENIMDLLDNMIVSHLPAQYRVFIFDDCDTLSPDSWSAISKVIDRAPRRLVFIFVSSSLDVLPHIIISRCQKFFIPKLKDADIIYTLQWIASKEGLEIDKEALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKERQRRKFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYLLPTSSDNSFNHSPLPLNSAAQRDVSRRSSSHAQLPDRDKQLPKDARTGSFYAGRADNDMMKGFISEKKGHASTDIAPQKTPLHTGTMNKAGERKDSGTYRGIEEIWLEVLGKIQVNGLKEFLYQEGNLISVSFGAAPTVQLMFNTQQAKAMAEKFRSLILQSFESVLGSSLTIEIRCDPNNNKGGGRVPLILPAGKDSTSRIGDESLHVDSHKRDTGEIEEVGMSQVAVHAGSCMRSVDGVGIEQRATSEKKPTMTSIPEGTKLRDRTQSQSLVRSKVSLAHVIQQAEGCTQRNSWSKRKAVSIAEKLEQENLRLESRSRSLLCWRASRVTRRKLSRLKIRTRKPHKLLKLVSCGRCLSTKSPR* 1178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g02096 1177 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 461 805 - -
Pte13g02096 1177 Coils Coil 768 795 - -
Pte13g02096 1177 Coils Coil 1111 1131 - -
Pte13g02096 1177 SMART AAA_5 491 632 IPR003593 GO:0016887
Pte13g02096 1177 MobiDBLite consensus disorder prediction 86 108 - -
Pte13g02096 1177 FunFam DNA polymerase III subunit gamma/tau 633 695 - -
Pte13g02096 1177 MobiDBLite consensus disorder prediction 209 228 - -
Pte13g02096 1177 Gene3D - 450 629 IPR027417 -
Pte13g02096 1177 SUPERFAMILY post-AAA+ oligomerization domain-like 703 806 IPR008921 GO:0003677|GO:0006260
Pte13g02096 1177 MobiDBLite consensus disorder prediction 133 149 - -
Pte13g02096 1177 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 457 682 IPR027417 -
Pte13g02096 1177 Gene3D - 633 695 - -
Pte13g02096 1177 Pfam DNA polymerase III subunits gamma and tau domain III 688 807 IPR022754 GO:0003887
Pte13g02096 1177 MobiDBLite consensus disorder prediction 882 907 - -
Pte13g02096 1177 NCBIfam DNA polymerase III subunit gamma/tau 458 806 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Pte13g02096 1177 Pfam DNA polymerase III, delta subunit 474 632 - -
Pte13g02096 1177 CDD HLD_clamp_pol_III_gamma_tau 632 695 IPR045085 -
Pte13g02096 1177 MobiDBLite consensus disorder prediction 817 841 - -
Pte13g02096 1177 MobiDBLite consensus disorder prediction 84 228 - -
Pte13g02096 1177 CDD AAA 473 631 - -
Pte13g02096 1177 MobiDBLite consensus disorder prediction 842 857 - -
Pte13g02096 1177 MobiDBLite consensus disorder prediction 817 866 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g02096 Pte-Chr13 33616798 33623398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g02096 458 744 Core DNA Replication Machinery Family AT1G21690 25.000 1.41e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g02096 - - qsa:O6P43_012827 1581.23