Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g02088 ATGGAAGTGCCGAATGACAGTGTGAGGGGTAGGCGTAAGACATCAAGAGGGCACCATAGATTTGTTGGGGTGAGGCAAAGGCCATCTGGGAGATGGGTTGCAGAGATCAAAGACTCGTTGCAGAAGGTAAGGCTCTGGCTTGGAACATTCGACACTGCAGAGGATGCTGCTCGCGCATACGATGAGGCTGCTCGAGCTTTGCGCGGTGCTAATGCTCGTACGAACTTCGAGTTACCGGAATCTGCGAATAAAAGTCGTTCGAGCTACATGCCTGAGAAGCTTGAGCCTTTTTCGTTTGAGGATGTTTGTGCAGATGGGGCTGAAGGGGAAGGCCTTCTTGGTGCACTCAAAGCCAAGATTTTTGAAGGGAGAGGAGCAAAAGATGTTGCAGCACCGTCTCTCAGTTTAGGTTTGCCGTCGAAAAAATCAACTGCAACAGCTCCAAGCAGTTCAACACAGAAGACTTGTGGCAAGAGAGATCATTCAGCTATTGCTGCTGCTTCTGTCCCTGAAAAAACTGTCAGCATCAGCACCATACATGATTTCAGTCACAATAACTCGACAAGTATCAATTTTTCTAAGCCTACCCCAATTGCAAATCCAGATAATCACCAATCTGTGGATGCTGGTAATGTTGGACTCAGATGGCAACAACCAAGCCAACCGGCCTCCGCAACAGCAATAACGACAGCAGCCACAACACCAACAGCAACAGCGACGACGACCATGTCATGGTCTAATGGATCTGCAGCTTATCATGAATTGCCATGGTCTACACAGATGAACCATGTTCCTGCAGAAAATAGCATGCTTGCTTCAATAAATGATTCTGCATCTACATGGACACTTTCTGGGTATCATCCTGTTTCGACGTTGAATTTGAGTTATGCTGATAGCATGTCTAACACTACTAAGCTTACAGCTGACTCGTATTGGCCCTCTCATGAGCAAACACTAGTGCAATGTGACAATAGTGGTTGGATTACCTCGCATAGTCCTTGGGATCCCATCTTCTACGTTACCTCTCAGCTTGGATGA 1038 0.4711 MEVPNDSVRGRRKTSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDEAARALRGANARTNFELPESANKSRSSYMPEKLEPFSFEDVCADGAEGEGLLGALKAKIFEGRGAKDVAAPSLSLGLPSKKSTATAPSSSTQKTCGKRDHSAIAAASVPEKTVSISTIHDFSHNNSTSINFSKPTPIANPDNHQSVDAGNVGLRWQQPSQPASATAITTAATTPTATATTTMSWSNGSAAYHELPWSTQMNHVPAENSMLASINDSASTWTLSGYHPVSTLNLSYADSMSNTTKLTADSYWPSHEQTLVQCDNSGWITSHSPWDPIFYVTSQLG* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g02088 345 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Pte13g02088 345 MobiDBLite consensus disorder prediction 1 20 - -
Pte13g02088 345 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Pte13g02088 345 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Pte13g02088 345 Coils Coil 53 73 - -
Pte13g02088 345 SUPERFAMILY DNA-binding domain 21 77 IPR016177 GO:0003677
Pte13g02088 345 FunFam ethylene-responsive transcription factor RAP2-11 19 78 - -
Pte13g02088 345 CDD AP2 20 77 IPR001471 GO:0003700|GO:0006355
Pte13g02088 345 Gene3D AP2/ERF domain 19 78 IPR036955 GO:0003700|GO:0006355
Pte13g02088 345 MobiDBLite consensus disorder prediction 137 158 - -
Pte13g02088 345 MobiDBLite consensus disorder prediction 133 160 - -
Pte13g02088 345 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Pte13g02088 345 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 17 229 - -
Pte13g02088 345 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g02088 Pte-Chr13 33492134 33493171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g02088 12 76 AP2-EREBP Transcription Factor Family AT5G19790 71.212 5.27e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte13g02088 AP2 9.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g02088 - - tcc:18605918 238.424