Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g02085 ATGAACAGACGAGGGGATGGGGGTGGCAGCGGCGGCGTCGATGGCGGAGGTTCACGTGTTCGCTTGAACTCAGTATTCTACGCGGACACGTATCATCCGATTCAAGCAGGAAGCATTGACGGTATTGATATCCATCCGCACGACAATGCAGTTTACAGAGCACTTCTCTGTTCCTCAGCTGGTCTGTATGACCCTTTTGGCGACCCTAAAGTTGTTGGAGACCCTTATTGCACAATCTTTGTTGCTCGCCTTTCTCGCCTTACCACTGAACAAACCCTCCTCAAGGCTATGAGCAAGTATGGTCAGGTGAAAAATCTTCGCCTGGTCAGGGATATTGTAACGGGAGCCTCACGTGGTTATGCTTTTGTTGAGTATGAAACAGAATCTGAGATGCGGCGAGCATATAAGGATGCACATCATTCCCACATTGATGATTGTGAAATCATAGTTGATTACAATAGGCAACAATTGATGCCAGGGTGGATTCCACGAAGATTAGGAGGAGGTCTTGGTGGTAGGAAGGAATCTGGACAACTTCGATTTGGAGGAAGGGAAAGGCCGTTCCGTGCCCCTATATTGCCTATCCCTTACAATGATTTGAAAAGGCTTGGTATTCCACTGCCTCCAGAAGGAAGATACATGTCACGCTACCAGGATCCATCGCCACCTCAAAGAGAAACGAGCTCAGTATATAAGGAAGAAGTATCTCACAAGAGGCGATCAAGGGATAGGGTGGATAGTGCTGCCATTAGGAATTCAGTGGATACACGTTCTGAAGAGTACGAGAAAATTGAAAGAGAATCTCGCACTCATAGAAGAAGCCCCTCGGAGAGAGAAGAAAGTTACAGAAAGAAAAGCACAAGAGAGAAGGATGGCAATATCATCTTCGAGGTTCAGAGGAACATGATTACCATTACAAGAAGAGCTCTAGCGAAGCCGGTCCTATAA 948 0.4684 MNRRGDGGGSGGVDGGGSRVRLNSVFYADTYHPIQAGSIDGIDIHPHDNAVYRALLCSSAGLYDPFGDPKVVGDPYCTIFVARLSRLTTEQTLLKAMSKYGQVKNLRLVRDIVTGASRGYAFVEYETESEMRRAYKDAHHSHIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGRKESGQLRFGGRERPFRAPILPIPYNDLKRLGIPLPPEGRYMSRYQDPSPPQRETSSVYKEEVSHKRRSRDRVDSAAIRNSVDTRSEEYEKIERESRTHRRSPSEREESYRKKSTREKDGNIIFEVQRNMITITRRALAKPVL* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g02085 315 FunFam Small nuclear ribonucleoprotein U11/U12 subunit 35 64 185 - -
Pte13g02085 315 SUPERFAMILY RNA-binding domain, RBD 64 184 IPR035979 GO:0003676
Pte13g02085 315 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 26 265 - -
Pte13g02085 315 Gene3D - 64 184 IPR012677 -
Pte13g02085 315 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 155 IPR000504 GO:0003723
Pte13g02085 315 SMART rrm1_1 78 151 IPR000504 GO:0003723
Pte13g02085 315 MobiDBLite consensus disorder prediction 230 289 - -
Pte13g02085 315 MobiDBLite consensus disorder prediction 211 289 - -
Pte13g02085 315 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 148 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g02085 Pte-Chr13 33450385 33457573 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g02085 77 153 Eukaryotic Initiation Factors Gene Family AT1G49760 29.870 6.70e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g02085 K13155 - zju:107412914 387.111