Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g02081 ATGAACAGACGAGGGGATGGGGGTGGCAGCGGCGGCGTCGATGGCGGAGGTTCACGTGTTCGCTTGAACTCAGTATTCTACGCGGACACGTATCATCCGATTCAAGCAGGAAGCATAGACGGTATTGATATCCATCCGCACGACAATGCAGTTTACAGAGCACTTCTCTGTTCCTCAGCTGGTCTGTATGACCCTTTTGGCGACCCTAAAGTTGTTGGAGACCCTTATTGCACAATCTTTGTTGCTCGCCTTTCTCGCCTTACCACTGAACAAACCCTCCTCAAGGCTATGAGCAAGTATGGTCAGGTGAAAAATCTTCGCCTGGTCAGGGATATTGTAACGGGAGCCTCACGTGGTTATGCTTTTGTTGAGTATGAAACAGAATCTGAGATGCGGCGAGCATATAAGGATGCACATCATTCCCACATTGATGATTGTGAAATCATAGTTGATTACAATAGGCAACAATTGATGCCAGGGTGGATTCCACGAAGATTAGGAGGAGGTCTTGGTGGTAGGAAGGAATCCGGACAACTTCGATTTGGAGGAAGGGAAAGGCCGTTCCGTGCCCCTATATTGCCTATCCCTTACAATGATTTGAAAAGGCTTGGTATTCCACTGCCTCCAGAAGGAAGATACATGTCACGCTACCAGGATCCATCGCCACCTCAAAGAGAAACGAGCTCAGTATATAAGGAAGAAGTATCTCACAAGAGGCGATCAAGGGATAGGGTGGATAGTGCTGCCATTAGGAATTCAGTGGATACACGTTCTGAAGAGTACGAGAAAATTGAAAGAGAATCTCGCACTCATAGAAGAAGCCCCTCGGAGAGAGAAGAAAGTTACAGAAAGAAAAGCACAAGAGAGAAGGATGGCCAATATCATCTTCGAGGTTCAGAGGAACATGATTACCATTACAAGAAGAGCTCTAGCGAAGGCCGGTCCTATAAAAGGAGCGCAAAGGATAGGGATGAGCGCTCTCACAAGCTGCATAAACCCAGGCATGAGAAGTTTAGTAGTACTCATGAGACATGA 1035 0.4705 MNRRGDGGGSGGVDGGGSRVRLNSVFYADTYHPIQAGSIDGIDIHPHDNAVYRALLCSSAGLYDPFGDPKVVGDPYCTIFVARLSRLTTEQTLLKAMSKYGQVKNLRLVRDIVTGASRGYAFVEYETESEMRRAYKDAHHSHIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGRKESGQLRFGGRERPFRAPILPIPYNDLKRLGIPLPPEGRYMSRYQDPSPPQRETSSVYKEEVSHKRRSRDRVDSAAIRNSVDTRSEEYEKIERESRTHRRSPSEREESYRKKSTREKDGQYHLRGSEEHDYHYKKSSSEGRSYKRSAKDRDERSHKLHKPRHEKFSSTHET* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g02081 344 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 148 IPR000504 GO:0003723
Pte13g02081 344 Gene3D - 64 184 IPR012677 -
Pte13g02081 344 SUPERFAMILY RNA-binding domain, RBD 64 184 IPR035979 GO:0003676
Pte13g02081 344 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 26 282 - -
Pte13g02081 344 MobiDBLite consensus disorder prediction 230 344 - -
Pte13g02081 344 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 155 IPR000504 GO:0003723
Pte13g02081 344 SMART rrm1_1 78 151 IPR000504 GO:0003723
Pte13g02081 344 MobiDBLite consensus disorder prediction 211 344 - -
Pte13g02081 344 FunFam Small nuclear ribonucleoprotein U11/U12 subunit 35 64 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g02081 Pte-Chr13 33406602 33413810 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g02081 77 153 Eukaryotic Initiation Factors Gene Family AT1G49760 29.870 6.44e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g02081 K13155 - cave:132162976 421.779