Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g02076 ATGGATCGGGTAGACAGGCGAGGTAAAGATGTCATTTTGAGTGAGGAGGATGAGAATTTGAGTAGAGTAGGTAATGGGGTTGCTGTTCATGCTACCGTTGCGAACGCTTCGGTTGAGAAAGCTGGTGTGACTGGTGAAAGTAAGGTTTCGGCAGCAGAGGATAATGAGAATTTTAGTAAAGAAGTTAATGGGACTGCTGTAGATGCTACCATTTTAAGTGCTTCGGTTGAGAAAGCTGGTGTTAGTGGTGAAAGTAAGATTTCTGTGGAAGAGGATGATGACTTAGATTTAAAAGAGGGACCGAAGGATGGAAAAACAAAGATTATGGTACCAGGTAAGCACGATCAGGAAGGGAGCAATGAAACATCAAATGAGGTTGATCAGGAAACGAGTTATAGTGCCAGAAATTCCGTTGATGGGATTGAACGTAATACTGAGGTCGTAATAGGATCAGCACAGGGTCAGAGTCAGGCTGTAGATGTGAATGACAGAAATAAGAAGCCTGATTTCAAGGATGGAAAACTAGCATTGAATAAGGTGTTGGCTCAAGAACCAAATAAAAAGGTTTCTGAAATACAGAAGGACTCATGTGTGATTGATATGAAGTGTGGAAGTGGTAGATCAATTGGTGAAGATGGAGAAAGGGTTTGTAGGATTTGCCATCTGGGTTCTGGACAATCAGCTGAGACAGCAGGCAGTGGTACTTCTATTACTACCGGTGGAGATTTGATTCATCTTGGTTGTGTATGTAAAGACGAGCTAGGTATAGCTCATAGTCAATGTGCCGAGGCATGGTTTAAGCTAAAAGGAAACAGATTATGTGAAATATGTGGTGAGACAGCAAAAAATGTTGCTGGTGTAGGAGATGAGAGGTTTATGGAAGAGTGGAATGGAAGGAGATTAACTGGTATCAGCAGCAACCCATCAGGAAGAGTAGTTGATAGATGGTGGAGAGGACAGCCATTTTGTAACTTTCTGATGGCCTGCCTGGTAATAGCTTTTGTGCTTCCATGGTTTTTCCGTGTGAATATATTCTAG 1038 0.422 MDRVDRRGKDVILSEEDENLSRVGNGVAVHATVANASVEKAGVTGESKVSAAEDNENFSKEVNGTAVDATILSASVEKAGVSGESKISVEEDDDLDLKEGPKDGKTKIMVPGKHDQEGSNETSNEVDQETSYSARNSVDGIERNTEVVIGSAQGQSQAVDVNDRNKKPDFKDGKLALNKVLAQEPNKKVSEIQKDSCVIDMKCGSGRSIGEDGERVCRICHLGSGQSAETAGSGTSITTGGDLIHLGCVCKDELGIAHSQCAEAWFKLKGNRLCEICGETAKNVAGVGDERFMEEWNGRRLTGISSNPSGRVVDRWWRGQPFCNFLMACLVIAFVLPWFFRVNIF* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g02076 345 Pfam RING-variant domain 217 277 IPR011016 GO:0008270
Pte13g02076 345 SMART ringv_2 216 278 IPR011016 GO:0008270
Pte13g02076 345 MobiDBLite consensus disorder prediction 84 121 - -
Pte13g02076 345 SUPERFAMILY RING/U-box 213 280 - -
Pte13g02076 345 ProSiteProfiles Zinc finger RING-CH-type profile. 209 284 IPR011016 GO:0008270
Pte13g02076 345 PANTHER ZINC FINGER, RING-CH-TYPE 118 345 - -
Pte13g02076 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 287 IPR013083 -
Pte13g02076 345 MobiDBLite consensus disorder prediction 80 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g02076 Pte-Chr13 33375807 33379897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g02076 199 344 C3H Transcription Factor Family AT5G05830 42.208 9.96e-29 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g02076 - - qsu:111996639 267.7