Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g02056 ATGGATTCTTCTGGGGCTGCTTCAGAAGGAAAAAATCCAAAGAGAGACGAGAGTCCTGATAAGAATGATGATGGTGATACTGTCGGAAATAGCAACAATAGTAAGATTGTAAATTCCAACGAAGGACAGAGCAAGCCAAAGCGTCAGATGAAGACGCCATTTCAGCTTGAAGCTCTGGAGAAAGCTTATGCTATGGAGACATACCCATCGGAATCAATTAGAGCAGAGCTATCTGAGAAATTGGGATTGACGGATCCGACAGTTGCAGATGTGGTTTTGTCATAG 285 0.4316 MDSSGAASEGKNPKRDESPDKNDDGDTVGNSNNSKIVNSNEGQSKPKRQMKTPFQLEALEKAYAMETYPSESIRAELSEKLGLTDPTVADVVLS* 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g02056 94 MobiDBLite consensus disorder prediction 1 53 - -
Pte13g02056 94 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 24 85 IPR044977 GO:0006357
Pte13g02056 94 ProSiteProfiles 'Homeobox' domain profile. 42 94 IPR001356 GO:0003677
Pte13g02056 94 MobiDBLite consensus disorder prediction 25 50 - -
Pte13g02056 94 MobiDBLite consensus disorder prediction 9 24 - -
Pte13g02056 94 CDD homeodomain 47 88 IPR001356 GO:0003677
Pte13g02056 94 SMART HOX_1 44 94 IPR001356 GO:0003677
Pte13g02056 94 Pfam Homeodomain 45 88 IPR001356 GO:0003677
Pte13g02056 94 Gene3D - 9 90 - -
Pte13g02056 94 SUPERFAMILY Homeodomain-like 28 88 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g02056 Pte-Chr13 33147461 33147928 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g02056 38 85 Homeobox Transcription Factor Family AT1G28420 70.833 5.04e-17 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pte13g02056 Homeodomain 1.4e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g02056 - - qsa:O6P43_031877 110.538