Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g02048 ATGGCGTCTTCTCCGTTATCCCCTGCTTCCTTGACTCGTGAGGGACGTTACAGAGGGGTCAGGAAGAGGCCATGGGGTCGCTATGCAGCTGAGATACGTGATCCATGGAAGAAAACTCGAGTGTGGTTGGGCACATTTGACACTCCTGAAGAAGCAGCGCTCGCCTATGATGCTGCTGCTCGTTCACTCCGTGGACTCAAAGCTAAGACCAACTTCCCTCCTGTCGAAACTGCTGGAAGGTTCTGTCGACTTGATCTCAAAGCTGCAACCCCAGGTCAACTATGGCCTTCATTAGCATCCGGACAACACAAATACATGCTTTGTGAGTTTCTTCCAACTGATGTTCTCAGAGAAAATGTAGATCTAGTAGAATCTCGCCATCCGCCTTACGCAGCCACCAGTTATAGCTGGTGTCAAAGGACTTTCTCCGTCATCGGTGGAAGGGGGGGTGGTTCTGAGTTGCGGGAGTGCACTAGTACGATTCTTGGCATTATGCGACGTGGGCTGCCAATTGATCTTAATGAGCCTCCACCGCTGGGGCTGTAA 546 0.5147 MASSPLSPASLTREGRYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDAAARSLRGLKAKTNFPPVETAGRFCRLDLKAATPGQLWPSLASGQHKYMLCEFLPTDVLRENVDLVESRHPPYAATSYSWCQRTFSVIGGRGGGSELRECTSTILGIMRRGLPIDLNEPPPLGL* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g02048 181 SUPERFAMILY DNA-binding domain 16 73 IPR016177 GO:0003677
Pte13g02048 181 Pfam AP2 domain 16 65 IPR001471 GO:0003700|GO:0006355
Pte13g02048 181 Gene3D AP2/ERF domain 15 74 IPR036955 GO:0003700|GO:0006355
Pte13g02048 181 CDD AP2 16 75 IPR001471 GO:0003700|GO:0006355
Pte13g02048 181 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Pte13g02048 181 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Pte13g02048 181 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Pte13g02048 181 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Pte13g02048 181 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 16 96 - -
Pte13g02048 181 FunFam Ethylene-responsive transcription factor 2 16 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g02048 Pte-Chr13 33075377 33076821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g02048 6 182 AP2-EREBP Transcription Factor Family AT1G28360 45.408 4.50e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pte13g02048 AP2 2.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g02048 - - cam:101504196 179.104