Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g02033 ATGCAAAGTGGAAAGGAGAGACAAGAAGCACAAGAAGTAGTAGAAGATGATGTGGACGAAGGCCCACCTCCTGGATGGCAAACACTTCCTCCTCCACCCCAACCTCCTAGACCTGCAGAAATGGGCCAGATGGTTTGTGGTTCTTGTCGCCGCCTGCTTACGTACCAACGAGGAGCCAAGCATGTTAAGTGTTCTTGCTGCCAGACGGTCAACCTTGTCCTAGAAGCTCATGAAGTTGGGGTGGTTAGGTGTGGCAGTTGTGCCGTGTTATTGATGTACCCTTATGGTGCTTCACAAGTAAGGTGTTCTTCATGCCGTTTCGTGACAGAAATTGGGGTAGGTGAACTTCTCAATCTAAGATCTATATCGATATTCTCCTTTTCTCATCCTTTTGGTTTACTTGGAATTGAGACCATAGGTTATCTAACAGGAAAAACTTTGGTAACAAAAGTGAGTAAGTTTCCGAATGCTGCAATTAGTGATTGGTTTAAATGGAGAGCCATTGTCGCAAGTGAAAGCAAGAATTGCCTGAATTTGGGTCTGTGTATCACAAGATAA 558 0.448 MQSGKERQEAQEVVEDDVDEGPPPGWQTLPPPPQPPRPAEMGQMVCGSCRRLLTYQRGAKHVKCSCCQTVNLVLEAHEVGVVRCGSCAVLLMYPYGASQVRCSSCRFVTEIGVGELLNLRSISIFSFSHPFGLLGIETIGYLTGKTLVTKVSKFPNAAISDWFKWRAIVASESKNCLNLGLCITR* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g02033 185 PANTHER PROTEIN LSD1 22 114 IPR040319 -
Pte13g02033 185 MobiDBLite consensus disorder prediction 24 39 - -
Pte13g02033 185 NCBIfam zinc finger domain, LSD1 subclass 43 73 IPR005735 -
Pte13g02033 185 NCBIfam zinc finger domain, LSD1 subclass 82 109 IPR005735 -
Pte13g02033 185 Pfam LSD1 zinc finger 84 108 IPR005735 -
Pte13g02033 185 Pfam LSD1 zinc finger 46 70 IPR005735 -
Pte13g02033 185 MobiDBLite consensus disorder prediction 1 39 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Pte13g02033 zf-LSD1 3.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g02033 - - gmx:100780865 150.214