Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g02032 ATGGCCTTTGAGCCTTACTATTCTCAGGAATGGAAAACCATCCAAAGTTCTGTGGTTGAATCAGAAAGCTCGAAAGCTTGTTTTGACTGTAACATCTGCTTGGACTTTGCCAACGAACCTGTCGTCACCCTATGTGGCCACCTCTACTGCTGGCCATGCATCTACAAGTGGCTTCATGTGCAGAGTGATTCACTTGCTTCAGACGAACACCCACAATGCCCTGTTTGCAAGGCTGATATCTCTCACACCACAATGGTCCCATTGTATGGTCGCGGCCAATCCACAAGTGATAGTGAAGGGAAAGCACCGTCTAAAGGCCTTATCATACCACCAAGACCGCCTGCTTGTGGTGCCCATGTTGCATTACCTAATTCATCTCAAAGCGGTCAGCAGCAGCTTCCATATCGTAATCCATATCAGAGTCAACATTACCTGACTCATCAAGAGGATTCTTCTTCTTCCCCAGTGCTGCATATTGGAGGGTCTATGACACCAGGGATACATAACCCTGTTGTTGGTATGGTTTATGCTAGAGTTTTTGGGAATTCAGAGAGTTTATATACCTATCCAAATTCATACCAGTTGACGGGGAGCAGTCCTAGATTGAGAAGGCAGGAGATGCAGGCTGATAAATCATTGAACAGAATTTCTATTTTCCTACTCTGTTGTTTTCTTCTCTGTCTCATTGTGTTTTAG 696 0.4497 MAFEPYYSQEWKTIQSSVVESESSKACFDCNICLDFANEPVVTLCGHLYCWPCIYKWLHVQSDSLASDEHPQCPVCKADISHTTMVPLYGRGQSTSDSEGKAPSKGLIIPPRPPACGAHVALPNSSQSGQQQLPYRNPYQSQHYLTHQEDSSSSPVLHIGGSMTPGIHNPVVGMVYARVFGNSESLYTYPNSYQLTGSSPRLRRQEMQADKSLNRISIFLLCCFLLCLIVF* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g02032 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 136 IPR013083 -
Pte13g02032 231 CDD RING-HC_AtRMA-like 28 78 - -
Pte13g02032 231 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Pte13g02032 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 8 228 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pte13g02032 231 SMART ring_2 30 76 IPR001841 -
Pte13g02032 231 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Pte13g02032 231 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Pte13g02032 231 SUPERFAMILY RING/U-box 26 89 - -
Pte13g02032 231 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 6 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g02032 Pte-Chr13 32969402 32972963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g02032 28 232 C3H Transcription Factor Family AT4G28270 40.094 1.95e-41 138