Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g02025 ATGTATGTAGCTTCCATGCGCAAGTCTTTCAAGGATTCCTTGAAAGTGCTTGAAGCTGATATTCAGCATGCAAATACACTCGCCTCAGATTTTCCCCGGGATTATGATGGCGCTTGTCTGCAAATGAGGATGTCTTACAGTCCCGTGGCACATTTCTTACTCTTTTTGGTACAATGGACGGACTGCCATCTCGCCGGAGCACTGGGATTGCTACGCATACTAATTTTCAAGGTCTATGTGGATGGAACAACAACTATGTCTACTCATGAAAGAAGAGCTAGTGTAAGAGAGTTCTATGCTGTAATATATCCCTCTCTGTTGCAACTTCAAAAAGGTGTCACTGACACGGATGATAAAAAGCAAAAGGCTGTATGTATGGAGAGGTATAGAAGAAGAGATGATGAGGACTGTAAGATATTGGATGTCGATGTTGAACGAGAAGAAGAATGTGGAATATGCATGGAAATGAATAGCAAGATCGTGTTGCCGAACTGCAACCATGCCATGTGCTTGAAATGTTATCGAGAATGGCGAATGAAATCACAGTCGTGCCCATTTTGCCGTGACAGTCTTAAAAGAGTGAATTCTGGTGATCTCTGGGTATTCACCAACAGCAGGGACATAGTAGATATGGCCACTGTGACAAGAGAGAACCTCAGAAGGCTTTTCCTGTATCTAGACAAGTTGCCTGCAGTAGTCCCAGATTCGCTCTTTGATATGTATGATTCTCACCTAAGATAA 741 0.4291 MYVASMRKSFKDSLKVLEADIQHANTLASDFPRDYDGACLQMRMSYSPVAHFLLFLVQWTDCHLAGALGLLRILIFKVYVDGTTTMSTHERRASVREFYAVIYPSLLQLQKGVTDTDDKKQKAVCMERYRRRDDEDCKILDVDVEREEECGICMEMNSKIVLPNCNHAMCLKCYREWRMKSQSCPFCRDSLKRVNSGDLWVFTNSRDIVDMATVTRENLRRLFLYLDKLPAVVPDSLFDMYDSHLR* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g02025 246 ProSiteProfiles Zinc finger RING-type profile. 150 188 IPR001841 -
Pte13g02025 246 SUPERFAMILY RING/U-box 139 192 - -
Pte13g02025 246 SMART ring_2 150 187 IPR001841 -
Pte13g02025 246 FunFam RING/U-box superfamily protein 129 197 - -
Pte13g02025 246 Pfam Zinc finger, C3HC4 type (RING finger) 147 193 - -
Pte13g02025 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 197 IPR013083 -
Pte13g02025 246 PANTHER RING FINGER PROTEIN 41, 151 8 244 - -
Pte13g02025 246 ProSitePatterns Zinc finger RING-type signature. 165 174 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g02025 Pte-Chr13 32901721 32904871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g02025 115 191 C3H Transcription Factor Family AT5G41350 33.333 1.37e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g02025 K25840 - vvi:100244841 456.062