Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g02012 ATGGTGATGGAGGATAGTAGAAATTTGGGCTGCTTCAATTCAGAGTATGATGGAGCTGAGGATGTGATTTTAGATCTTGATATGTTCTACGACATTCTTGGTGAAGATTCTGATCATTCACAGAAAAATCTAGAGGAGTTCCCCAAACACGGGTCACCAGAGTTGTTAGCTTCAGAGGAAGGGAGTCATTACCACTCTGTTCAACAAAGTGGAACATTAAATCCTGGAACAAGAGCTTTGGATGGTATAGTTGATTCTGCAGTATATCCTGTCCCAAGTATTGAATGTGGAAAGTTTGAACAGAAATATGAGACTTGCTCTCCCGCGCATGATTCAAATGATTGCTCTAAAGATTGGCTTTCTCTGGTTCATAGAGATGATGCAATGGACTCAGAGAGCATTGGACTTTCACATTGTGAAATGCTAATTTCCTCCATGGACGCAAGTGGTTTTTCTGTGGTTTTAGATAAAAGTATTGAAGCATCTGGACGGGCAGATAATAGCTCAACTACATCTTTGCAGATGTCTTTCATGGATGCAAGTGGTTTTTCTGGCATGGGAACGTCATATGATTCTGGCATCTGTCTAGATTCCAATGTCATCAGTGACTATGCAGATTGTCACTCATCCATTCATTATTCAAATGATGTTGATCATAGACACTTTGTCCCTGATGCCTCACTTGGTTATTTTCCTTCCAGTTTTAATTCTCAATTTTTATCATATAGTGACGAAGCAAATACTACTGATGAGAAGGAGGAGTTTGTTGCTGACACTGCATGTGCAACTGATATTAATACTGGAAATACTGGAGAAAAATATTTTCCTCGTGGAACAGGATTCTCATCTGTAAATAATCCAAATGTTGAACTACGGAAGATTGGCTGTCAGAATAGTCAATATCTTTCAGTAAATAGTGGTGATTCTTCATTTGATGCTGGGGAAGGTGATTATACTGAAGAGAGGAAATCTAATCAACCTGTTCCTTTCACTCACCTGTACAACTGTAACATGAAGCAAGTTATACCTGGTTCTGAAGATAAAGTATATGATGAATTTGGTCCATCTTATCAAAATTCTACTCTCGGTATTCATTTAAATGCTTACTCAGACCAAAAACCAACGCAATTTTTAGGTTGCTCTTTTTATCCCCAGTATGACAAGAGTATTGATCAGTACAGAGTGTTATCTGGGAACACCAGTGATTGGAATTTGCGGCCACCTGCATACCAGACTTCTGTTCCCAGTGAGAAGCAGTTAAGTTGTCTTCAGAGTGAAAAGGAGGTAGAGGTAATTCAAAATGAAGTTTCTGGTTCTCATTTTTCGAAACTCAGCTATAGTTCAATTCATGGGAAGTCCAGTATGGTTGATGATGATGATGATGATGATGATGATTTGTGTATTATTGAAGCTATCAGTCATCCTGCACCTACAAATCGATCCAAATCACCTTATATTTCTGTAAATACTTCAAAACGTAATGCATACAGTGGATCTCCTCCTTACTCAGTGGAAGGCACTAGGGTTGCAACGAATAATGAGCGACATATATTACAAGTGGCATTGCAGGATTTCTCACAGCCAAAGTCCGAAATTTATCCACCTGAAGGAGCGCTGGCGGTTCCTCTTTTGAGACATCAGAGGATTGCTTTATCGTGGATGGTTCAAAAGGAAACAGCAGGCTTATGCTGCTCTGGAGGAATTCTTGCAGATGATCAGGGACTCGGTAAAACAGTCTCAACTATAGCTCTTATTCTCAAGGAACGCCCCCCTCCTTCTAAAGATTCCAAAGTTGTTGAAAAAACTGAGTCAGAAACTTTTAATTTGGATGAGGATGATGAGATAAATCATGCAAATTGCAAAAAGGAAGTTAAATTGCCTGATTTATGTCAGCAAATTTCAACAAAGACCATTAATTCTTCAGCTCAAGCTAAGGGAAGGCCATCTGCTGGAACTCTCATAGTTTGCCCTACCAGTGTTTTGCGTCAATGGGCTGATGAATTGCACAATAAGGTAACAAAGGAGGCAAATCTCTCTGTTCTTGTGTACCATGGCAATAGAACAAAGGATCCTTACGAGCTTGCCAAGTATGATGTGGTTATCACCACTTACTCAATAGTCAGCATGGAGGTTCCAAAGCAGCCTCTTATTAATAAGGATGCTGAAGAACTAGTGAATTGTGATGAGAATGCTGTTCCCCCACTGGGATTTCCATCAAGCAAGAAAAGAAAAAATCATCTTAGCTCAACTGAAAAGTCTTCCAAGAAACTAGAAGCTGCTTTGCTGGAATCTGTTGCTGGCCCACTTGCAAAAGTTTCATGGTTTAGAGTTGTCCTAGATGAGGCCCAGAGCATAAAAAATCACAGAACTCAAGTGGCAAGGGCCTGTTGGGGTCTTCGTGCAAAACGGAGGTGGTGCTTGTCTGGGACTCCTATCCAGAATGCTATTGATGATCTATACAGCTATTTCAGATTTCTCAGATATGACCCATATGCAGTTTATAAATCATTTTGTTCAACAATCAAGTTCCCTATAAGTAGAAGCCCAGCAAGAGGATACAGAAAGCTACAGGCTGTCTTGAAGACAATAATGTTACGTCGAACTAAAGGCACAATTCTTGATGGTCAACCTATTATTTCTCTACCACCCAAATTTGTGGAGCTTAGAAGGGTTGAGTTTTCAGATGAAGAACGTGATTTCTACTCTAGATTAGAGGCTGACTCACGAGCCCAATTCAAAGAATATGCTGATGCTGGAACAGTGAAACAAAATTATGTGAATATTTTGTTGATGCTTTTGCGCCTTCGTCAAGCTTGTGATCATCCACTTCTGGTCAACTATGATTCTATTTCCTTGGGGAAAAATTCAATTGAGATGGCGAAGAAACTTCCGCAGGAGAAACTACTGTGTCTTCTAAATTGTTTGGAAGCTTCCTTGGCTCTGTGTGCTATTTGTAATGATTCTCCAGAAGATGCTGTTGTTTCCATCTGTGGTCATGTATTTTGTAACCAGTGCATCTGTGAACATCTCACTGGTGATGAAAATAAATGCCCCACTGCGAAGTGCAAAGTTCAACTGAACAAATCCTCTGTATTTTCCAAAGCCACATTAAAAGACTGTCTCTCTGACCAGACTTTTAACACACCTGGTTCTTGTTTAGAAGTTGTTGATGAGGTCGATCCTTGTTCCAAGAGTGTGCCACCTGATTCTTCTAAAATTAAGGCTGCACTTGAATTTTTATGCACTCTGCGTAATCTTCAAGATACTACGTCATCTGATGTGTCTACTGGGAGCTCTTGTACTGAGATCATTGATTCTCCTGTGGACATGTCTGATAATCATACCAGTAGTCCCTTGAGAGATTGTCCTCAGAATAGGAGTACGGCGGTCAATGAAAAATCGAATAATTCAATCACACTAACTGGTGGGAAGGCCATAGTGTTTTCTCAGTGGACAAGAATGTTAGACTTGTTTGAAGCCTCTCTTAAGAATTCTTCAATCCAATATAGAAGGCTTGATGGGACAATGTCAGTTGTTTCCAGGGACAAAGCTGTGAAGGAATTTAACACACGTCCCGAGGTCTCAGTCATGATTATGTCTCTAAAAGCTGCAAGTCTTGGTCTGAACATGGTTGCTGCTTGCAATGTTATTATGCTCGATCTTTGGTGGAATCCGACTACCGAAGATCAGGCAATAGACAGAGCACATCGAATTGGGCAGACTCGACCTGTTACAGTTTTGCGGTTGACTGTGAGAGATACAGTTGAAGATCGAATTTTAGCTCTACAGCAAAAAAAGCGAGCAATGGTTGCATCTGCATTTGGAGAGGATGGAGCTGAAGGTCGTCAGACGCGGCTTACAGTGGAAGACCTAGAGTACCTGTTTATGGCTTGA 3894 0.4052 MVMEDSRNLGCFNSEYDGAEDVILDLDMFYDILGEDSDHSQKNLEEFPKHGSPELLASEEGSHYHSVQQSGTLNPGTRALDGIVDSAVYPVPSIECGKFEQKYETCSPAHDSNDCSKDWLSLVHRDDAMDSESIGLSHCEMLISSMDASGFSVVLDKSIEASGRADNSSTTSLQMSFMDASGFSGMGTSYDSGICLDSNVISDYADCHSSIHYSNDVDHRHFVPDASLGYFPSSFNSQFLSYSDEANTTDEKEEFVADTACATDINTGNTGEKYFPRGTGFSSVNNPNVELRKIGCQNSQYLSVNSGDSSFDAGEGDYTEERKSNQPVPFTHLYNCNMKQVIPGSEDKVYDEFGPSYQNSTLGIHLNAYSDQKPTQFLGCSFYPQYDKSIDQYRVLSGNTSDWNLRPPAYQTSVPSEKQLSCLQSEKEVEVIQNEVSGSHFSKLSYSSIHGKSSMVDDDDDDDDDLCIIEAISHPAPTNRSKSPYISVNTSKRNAYSGSPPYSVEGTRVATNNERHILQVALQDFSQPKSEIYPPEGALAVPLLRHQRIALSWMVQKETAGLCCSGGILADDQGLGKTVSTIALILKERPPPSKDSKVVEKTESETFNLDEDDEINHANCKKEVKLPDLCQQISTKTINSSAQAKGRPSAGTLIVCPTSVLRQWADELHNKVTKEANLSVLVYHGNRTKDPYELAKYDVVITTYSIVSMEVPKQPLINKDAEELVNCDENAVPPLGFPSSKKRKNHLSSTEKSSKKLEAALLESVAGPLAKVSWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYKSFCSTIKFPISRSPARGYRKLQAVLKTIMLRRTKGTILDGQPIISLPPKFVELRRVEFSDEERDFYSRLEADSRAQFKEYADAGTVKQNYVNILLMLLRLRQACDHPLLVNYDSISLGKNSIEMAKKLPQEKLLCLLNCLEASLALCAICNDSPEDAVVSICGHVFCNQCICEHLTGDENKCPTAKCKVQLNKSSVFSKATLKDCLSDQTFNTPGSCLEVVDEVDPCSKSVPPDSSKIKAALEFLCTLRNLQDTTSSDVSTGSSCTEIIDSPVDMSDNHTSSPLRDCPQNRSTAVNEKSNNSITLTGGKAIVFSQWTRMLDLFEASLKNSSIQYRRLDGTMSVVSRDKAVKEFNTRPEVSVMIMSLKAASLGLNMVAACNVIMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRAMVASAFGEDGAEGRQTRLTVEDLEYLFMA* 1298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g02012 1297 ProSiteProfiles Zinc finger RING-type profile. 982 1021 IPR001841 -
Pte13g02012 1297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 976 1033 IPR013083 -
Pte13g02012 1297 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 528 867 IPR027417 -
Pte13g02012 1297 Pfam SNF2-related domain 563 944 IPR000330 GO:0005524|GO:0140658
Pte13g02012 1297 SUPERFAMILY RING/U-box 979 1039 - -
Pte13g02012 1297 Pfam Zinc finger, C3HC4 type (RING finger) 982 1019 - -
Pte13g02012 1297 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 632 720 - -
Pte13g02012 1297 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1133 1292 IPR001650 -
Pte13g02012 1297 SMART ultradead3 539 846 IPR014001 -
Pte13g02012 1297 SMART helicmild6 1156 1239 IPR001650 -
Pte13g02012 1297 Gene3D - 738 880 IPR038718 -
Pte13g02012 1297 Gene3D - 516 606 IPR038718 -
Pte13g02012 1297 Pfam Helicase conserved C-terminal domain 1140 1239 IPR001650 -
Pte13g02012 1297 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 401 1296 - -
Pte13g02012 1297 CDD DEXDc_SHPRH-like 543 867 - -
Pte13g02012 1297 CDD SF2_C_SNF 1142 1249 - -
Pte13g02012 1297 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 750 879 - -
Pte13g02012 1297 Gene3D - 629 733 IPR038718 -
Pte13g02012 1297 Gene3D - 1066 1297 IPR027417 -
Pte13g02012 1297 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 875 1296 IPR027417 -
Pte13g02012 1297 ProSitePatterns Zinc finger RING-type signature. 997 1006 IPR017907 -
Pte13g02012 1297 SMART ring_2 982 1020 IPR001841 -
Pte13g02012 1297 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 558 829 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g02012 Pte-Chr13 32830109 32839401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g02012 430 1297 RAD5 or RAD16-like Gene Family AT1G61140 59.771 0.0 976
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pte13g02012 SNF2_N 1.9e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g02012 - - qsa:O6P43_031798 1202.19