Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g02002 ATGATGAGTACGTGGGGTACATGGGGTACATGGGAAGAACTCCTCCTTGGTGGGGCTGTTCTGCGTCACGGTACCGGAGACTGGAAAGTCGTCGCGGCCGAACTCCGAGCCAGAACCGTTTGTCCGTACACTTTTACCCCGGAGGTCTGTAAAGCCAAATATGAGGACTTGCAGCAGCATTATTCTGGGTGCAAGGCTTGGTTTACTGAGCTTCGGAAGAAAAGGATGGACGAGCTCAAGAAAGCTCTCGAACAATCGGAAGATTCAATTGGATCTCTGGAGACAAAGCTTGAATCTCTGAAGTCTGAAAAGGCCAATAGAGAAGATGATTGCCATGTAGATAGAGGGTCAAGCCAGACAGAATCTCTTGTGCCTTTCCTGAAATCTTCTAGAACTGAATCGAATAGTAAGGAGACCTCAAAGGATGGGCTATCTGCTGGTAGTTTTACGCATGAAACTAGGACAAACTGGATCGATGACTGCCAGGCTCCTGCAGCTCTTTCTTCTGCAGAAATGGAGACTAAAGCAGAACTTTCACCACATCTGGCGCTAGAGAAATTTTCAAGTATAGACAAGTTGGCGCTGTCATTTTATGGATTACAAGGAGGTGTTTTGAAGAGGAGGAGAGGAAAGCGAAAGAGGAAGGCTTGCAGCATGAGCGTCAAGGATGGTAGTGTTGGAGAAAGCGATTTCTTTGGTTCAGTTGATGTCATATCGCGGTGTAAAGACACATCTACTTGTAATTGTTGTGAGCTTGCCAATTCTCCACCTGTGGGTAGTGACAGTAGTAGATTGAACAAGGACGGTGCAGATGATTTATATCAGATTCTAAGTTCTGTCATGGAAAACGAAGGTGTTTATACATTCCATCATCGACTTGACAGCCAGAAGCGAGGAAGATACAAGAAAATGATCAGGCGACACATGGATTTTGATACATTAAGATCAAGAATAGACAGCAAAACCATTCAGTCGGCAATGGAGCTGTTCCGGGATCTACTTCTACTTGTGAACAATGCATTGGTCTTCTACTCCAGGAGTACTCGTGAATACAAAACTGCCCGACTGCTTAGAGACATTGTTACTGTAAAATTGAGGGACCATCGTAAGAATTCCACTGGTGGCAAGATTGCCTTGAACAATGCATCGGTTCCAGAAACAGCGCCCATCTCAACTGTAAAACCTCGTAGTGCTCCTCCAGCTAACATCAGCTGGCTATTAGCCAAGTTAACTGCCACTAATGCTGCTTCTGGTTCTGGAGCCTCAAATGTAACCAAATTGCCTTTCACTCCTGACTCCTCCTCACCTTCAGTGGGGTCCCTAGTTGTAACAAAGAAAGGGTTTGGTCGTCAAAGGAAAACTGGACGTGGAGGTGCTGCAGGTCCAAGACGGTCAGTGGCAGTGAAGACAAAGAAAAGAGTCAGGACGAAGTGA 1434 0.4596 MMSTWGTWGTWEELLLGGAVLRHGTGDWKVVAAELRARTVCPYTFTPEVCKAKYEDLQQHYSGCKAWFTELRKKRMDELKKALEQSEDSIGSLETKLESLKSEKANREDDCHVDRGSSQTESLVPFLKSSRTESNSKETSKDGLSAGSFTHETRTNWIDDCQAPAALSSAEMETKAELSPHLALEKFSSIDKLALSFYGLQGGVLKRRRGKRKRKACSMSVKDGSVGESDFFGSVDVISRCKDTSTCNCCELANSPPVGSDSSRLNKDGADDLYQILSSVMENEGVYTFHHRLDSQKRGRYKKMIRRHMDFDTLRSRIDSKTIQSAMELFRDLLLLVNNALVFYSRSTREYKTARLLRDIVTVKLRDHRKNSTGGKIALNNASVPETAPISTVKPRSAPPANISWLLAKLTATNAASGSGASNVTKLPFTPDSSSPSVGSLVVTKKGFGRQRKTGRGGAAGPRRSVAVKTKKRVRTK* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g02002 477 Coils Coil 76 110 - -
Pte13g02002 477 MobiDBLite consensus disorder prediction 427 441 - -
Pte13g02002 477 CDD SANT 7 54 IPR001005 -
Pte13g02002 477 Gene3D - 262 374 IPR036427 GO:0005515
Pte13g02002 477 MobiDBLite consensus disorder prediction 427 477 - -
Pte13g02002 477 Pfam Bromodomain 275 355 IPR001487 GO:0005515
Pte13g02002 477 SUPERFAMILY Bromodomain 269 369 IPR036427 GO:0005515
Pte13g02002 477 MobiDBLite consensus disorder prediction 117 148 - -
Pte13g02002 477 MobiDBLite consensus disorder prediction 101 148 - -
Pte13g02002 477 MobiDBLite consensus disorder prediction 101 116 - -
Pte13g02002 477 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 6 156 - -
Pte13g02002 477 SMART bromo_6 266 370 IPR001487 GO:0005515
Pte13g02002 477 ProSiteProfiles Bromodomain profile. 281 351 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g02002 Pte-Chr13 32699900 32704744 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pte13g02002 Bromodomain 2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g02002 - - gmx:100804245 491.5