Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01994 ATGAACGACCTATTCTCCAGTTCCTTCAAAAAATACACGGATCTGAAGCAGCAAGCCTACTTGGACGATGTGGAGGCTGGCAAGGAAAACCCTAGTTTGGACAAGTTCTTTGAAGATGTGGAGAATGTCAAAGAAGACATGAGGCAAGTTGAGAAGCTCTACAAGAAACTACAGGAAGCCAATGAAGAATGCAAAATCGTCCACAATGCTAAAACCATGAAGGAGCTAAGGTCCAGGATGGACGCGGAAGTAACTCAGGTCTTGAAACGTGTGAAGCTTATCAAGGGGAAGCTTGAAGCTTTAGAGCGTTCAAATGCAGATCAAAGAAAGCTTCCCGGGTGTGGTCCTGGTTCGTCTGCCGATCGAACCAGAACCTCGGTTGTTTGTGGATTGGGAAAGAAACTCAAAGATATGATGGATGATTTCCAAGGACTCAGAGCAAGGATGCAAGCTGAGTACAAGGAAACAGTGGAAAGAAGATATTTCACTGTGACAGGAGAGAAACCAGATGAAGATACCATTGATAATTTGATATCAAGTGGAGAAAGTGAAAGCTTCCTGCAGAAGGCAATTCAAGAACAAGGAAGGGGTCAAATAATGGACACCATTTCTGAAATCCAAGAAAGGCATGATGCTGTGAAGGAAATAGAGAAGAACTTGATTGAACTGCATCAAGTTTTCTTGGACATGGCTGCTCTTGTGGAAGCTCAAGGCCAACAGCTAAATGACATAGAAAGTCATGTGGCGCATGCCAGTTCTTTTGTGAGACGAGGCACAACCCAGCTTGAGGATGCTAGAGAGTATCAGAAGAGTTCAAGGAAGTGGATGTGTTTTGCTGTACTTCTTGGCATCGTCCTCGTCATTGCTATTCTCCTGCCTGTGTTGAACGTATTTTTCCATTTCATCAAGATAAGTCAATAA 921 0.4354 MNDLFSSSFKKYTDLKQQAYLDDVEAGKENPSLDKFFEDVENVKEDMRQVEKLYKKLQEANEECKIVHNAKTMKELRSRMDAEVTQVLKRVKLIKGKLEALERSNADQRKLPGCGPGSSADRTRTSVVCGLGKKLKDMMDDFQGLRARMQAEYKETVERRYFTVTGEKPDEDTIDNLISSGESESFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVEAQGQQLNDIESHVAHASSFVRRGTTQLEDAREYQKSSRKWMCFAVLLGIVLVIAILLPVLNVFFHFIKISQ* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01994 306 Gene3D - 194 298 - -
Pte13g01994 306 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 30 160 - -
Pte13g01994 306 Coils Coil 33 70 - -
Pte13g01994 306 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Pte13g01994 306 FunFam Syntaxin 132 196 296 - -
Pte13g01994 306 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Pte13g01994 306 SUPERFAMILY t-snare proteins 31 258 IPR010989 GO:0016020|GO:0016192
Pte13g01994 306 CDD SNARE_syntaxin1-like 202 263 - -
Pte13g01994 306 Pfam SNARE domain 240 291 IPR000727 -
Pte13g01994 306 SMART tSNARE_6 198 265 IPR000727 -
Pte13g01994 306 CDD SynN 33 190 IPR006011 GO:0016020
Pte13g01994 306 SMART SynN_4 28 154 IPR006011 GO:0016020
Pte13g01994 306 PANTHER SYNTAXIN 41 284 IPR045242 -
Pte13g01994 306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Pte13g01994 306 Gene3D - 33 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01994 Pte-Chr13 32637625 32638545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01994 1 295 SNARE and Associated Proteins AT1G61290 79.661 1.03e-179 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01994 K08486 - qsa:O6P43_012571 500.745