Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01992 ATGACGACAGCTCCACCACCTGCGCAGCCGCCGGCTCCGTCGTCTTCTGCTTCGGCCTCATCGTTGTCTAAGGTTTGCTTTAATACGGAGTGTAAGGAATTGAAGTCAGATAGACCTAAGAAAGGTTGGAGACTCCGTACTGGCGAGTTTGCTGAGCTTTGTGATCGTTGCGGTTCTACATTTGAGGAGGGAAGATTCTGTGAGACGTTCCACCTAAATGCCTCTGGATGGAGATCTTGTGAGTCTTGTGGGAAGCTGATTCATTGTGGCTGCATTGTTTCAAGTCATACCTTCATGTTGCTGGATCCCGGTGGAATTGAATGCTTCACATGTGCGAGGAAAAACCTTGTGATGCCATCAAATCCAGTATGGCCATCATCTTTCTTTTTCCAGTCATCTTTTTCTGAGAGACTCAAGGACCTTTCTGTTAGAAGTTGGAGTCAGTTGGCTGGATCAGGACCTGTTCCTTGGAAGCAAGCACCAAGCCTGTTCAATTCTTCGTTTACTTCGTCTGAACCTCATCCAAGGGTGCCCTATGAACTTGACATGTCAAATGGAGTAGCAAAACTGAATGTGTCTTCCCTTGAAAAGAAAATTGAAGATTTATCTGAAAGACCCACAAATGGAAGTGTAAAGCTTGGGGCATCTGATCATGCGATTTTGAATGGAAACAAGTCTGAAGACAAAATCAATTCATGTTCAAACACTTCCCAACAGTCTGTATCTCTGAAGGAAAACTTATCTACACCACCAATTGCCTTGACTGTACCTAATACCTCTGCTAATGAAAGAAATGGTCAAGTAAGGATGGCAGGGGCTCTTCCACAATCAGCTCCTTCAATTTCTCAGGTTAAGCAGTATAATGGGGACATCTACAATGGAGTCAATGGACTCGATGCATCTGGTGACAATCCTAATCGCAACGGAAGGCCAAAGATAGAGGTTCGGGGAAGGAATCAATTCCTTTCCCGTTACTGGCCTAGATGTACTGACCAAGAGAAACAGCAAATATGCAGAGATCCAAATTCTGATCTTACTCCATTGTTTCAAAAGACTCTGAGTGCCAGTGATGCTGGGAGGATTGGACGTCTAGTGCTTCCAAAAAAATGTGCAGAGGCTTATTTTCCACCTATTTCTCAGCCTGAGGGGTTGCCGCTAAAAATATTGGACATGGAAGGGAAGGAGTGGGTATTCCAGTTCCGCTTCTGGCCAAATAACAACAGCAGAATGTATGTTCTGGAGGGTGTCACTCCGTGCATACAGTCCATGCAATTGCAGGCAGGCGATACAGTAACATTTAGTCGGCTGGAGCCTGGCGGAAAGCTAGTAATGGGGTTTAGAAAGGCGTCGAATGCCTCACCATCTGATCAGGATACAGAAACGAAGAAGTCTGGGATTGCTGCAAATGGTGATGCTGATTTGTTAGCTCCTAGTTCATGGTCTAAAGTTGATAAGTTAGGATACGTGGCAAAAGAAGCACCGGGAACTAAATCCTCCAGCAGCAAAAAAAGGAAGAGTGGCGTCTTAGGGTTGAAGAGTAAGAAGCTGAGAATTGATGATGAGGATCTTATAGAGTTGAAGATTACATGGGAAGAAGCTCAAGGCCTGCTTCGTCCCCCTCCTAATCATATTCCCAGTATTGTGGTTATTGAGGGCTTTGAATTTGAGGAATATGAGGATGCTCCAGTTATTGGCAAGCCGACAATTTTCACAACTAATGATGTGGGTGGAAAGATTCAGTGGGTTCAGTGTGAAGATTGTCTCAAATGGCGCAAGCTGCCGGCTAATGCAATTCTTCCATTAAGATGGACATGCTCTGATAATTCAACGGATCCACAAAGATCCTTATGTTCATCAGCCCAAGAATTGACAACTGAACAACTTGAAGATCTTCTGACACATTATAATTCCGGTATGACACCAAATCTTGTACTTAAATCTCTTGTACAATTGGTCAAAGTGGCAGGCTCTTGCACTCTTGATGGGGTTGGCCACATTTTTTAG 2004 0.4436 MTTAPPPAQPPAPSSSASASSLSKVCFNTECKELKSDRPKKGWRLRTGEFAELCDRCGSTFEEGRFCETFHLNASGWRSCESCGKLIHCGCIVSSHTFMLLDPGGIECFTCARKNLVMPSNPVWPSSFFFQSSFSERLKDLSVRSWSQLAGSGPVPWKQAPSLFNSSFTSSEPHPRVPYELDMSNGVAKLNVSSLEKKIEDLSERPTNGSVKLGASDHAILNGNKSEDKINSCSNTSQQSVSLKENLSTPPIALTVPNTSANERNGQVRMAGALPQSAPSISQVKQYNGDIYNGVNGLDASGDNPNRNGRPKIEVRGRNQFLSRYWPRCTDQEKQQICRDPNSDLTPLFQKTLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKILDMEGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPGGKLVMGFRKASNASPSDQDTETKKSGIAANGDADLLAPSSWSKVDKLGYVAKEAPGTKSSSSKKRKSGVLGLKSKKLRIDDEDLIELKITWEEAQGLLRPPPNHIPSIVVIEGFEFEEYEDAPVIGKPTIFTTNDVGGKIQWVQCEDCLKWRKLPANAILPLRWTCSDNSTDPQRSLCSSAQELTTEQLEDLLTHYNSGMTPNLVLKSLVQLVKVAGSCTLDGVGHIF* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01992 667 Gene3D - 327 453 IPR015300 -
Pte13g01992 667 MobiDBLite consensus disorder prediction 1 22 - -
Pte13g01992 667 SUPERFAMILY DNA-binding pseudobarrel domain 346 448 IPR015300 -
Pte13g01992 667 CDD B3_DNA 347 448 IPR003340 GO:0003677
Pte13g01992 667 FunFam B3 domain-containing transcription repressor VAL1 327 454 - -
Pte13g01992 667 SMART B3_2 349 450 IPR003340 GO:0003677
Pte13g01992 667 ProSiteProfiles Zinc finger CW-type profile. 575 625 IPR011124 GO:0008270
Pte13g01992 667 Pfam B3 DNA binding domain 349 448 IPR003340 GO:0003677
Pte13g01992 667 ProSiteProfiles B3 DNA-binding domain profile. 349 450 IPR003340 GO:0003677
Pte13g01992 667 MobiDBLite consensus disorder prediction 222 245 - -
Pte13g01992 667 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 23 636 - -
Pte13g01992 667 Coils Coil 185 205 - -
Pte13g01992 667 MobiDBLite consensus disorder prediction 448 468 - -
Pte13g01992 667 Pfam CW-type Zinc Finger 580 622 IPR011124 GO:0008270
Pte13g01992 667 Gene3D - 576 629 - -
Pte13g01992 667 MobiDBLite consensus disorder prediction 225 245 - -
Pte13g01992 667 MobiDBLite consensus disorder prediction 450 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01992 Pte-Chr13 32623295 32632149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01992 24 632 B3 DNA Binding Superfamily AT4G32010 43.065 1.41e-152 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pte13g01992 B3 1.1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01992 K09287 - qsa:O6P43_012570 922.154