Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01978 ATGGGAAGAGTACCATGTTGTGACAAGAATGGACTCAAGAGAGGTCCATGGACAGCAGAGGAAGATCAGAAACTTGTTGATTATATTCAGAAACATGGCTATGGCAATTGGCGGACACTCCCTAAGAATGCTGGTTTGCAAAGATGTGGAAAGAGTTGTCGTCTAAGATGGATAAACTATCTGAGGCCAGACATCAAACGTGGTCGTTTTACTTTACAAGAAGAGGAGACAATTATTCAGCTGCATAGTATTCTGGGGAACAAGTGGTCTGCAATTGCTTCTCGTTTACCTGGAAGAACAGACAACGAAATCAAGAACTACTGGAACACACACATCAGGAAAAGGTTGCTCAGGATGGGGATTGATCCTGTGACACACAGTCCCAGGCTTGACCTTCTCGATATCTCATCGATTCTAAACTCGTCTCTTTACAATTCATCACAGTTTCACATGTCAAGGTTTCTTGGTGTGCAACCTTCGGTCAATCCTGAGCTTCTAAAACTGGCCTCCTCTCTTGTACAAGCACAGAGAGGAAACCAAAACTTGTGCAGTACCCAAAATGACCAACACTGCAATCATGATCAGTTGTACAATCCACAGATCGAAAATCAAATTCAATGCTCGTTTTTGGAATCTGACCAAACACAAGAACTTCAACCTTGCTCCTCGTTGAGTACCCCATGTGTCTCTTACCCATCAAGCATAAACAACTTTAGCCCACAGTATGCTCAATTTAGTGATTGGCAAAGCGGTGGAATCACAAGTGGTTTAATCCAAGAATATGTGCCTATTCCAAGCTTCAATGACTATAGGACTGACCAGAGTATCATGGACCCAACAATGTCTGAAATCTCAGGTTTTCATTATTCCAATAGCAGCAACCAAAGTTTCGGGTTCACGTCAGTCTTATCGACCCCTTCATCAAGTTCAACTCCATTGAATTCAAATTCAACATATGGCAGCAGTGAGGATGAGAGGGAAAACTATGGAAGCAATAACCTTTTGAAATTTGATGTCCCAGAAATCTTGGATATTAATTATGAGTTCATGTAA 1053 0.4169 MGRVPCCDKNGLKRGPWTAEEDQKLVDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWINYLRPDIKRGRFTLQEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDISSILNSSLYNSSQFHMSRFLGVQPSVNPELLKLASSLVQAQRGNQNLCSTQNDQHCNHDQLYNPQIENQIQCSFLESDQTQELQPCSSLSTPCVSYPSSINNFSPQYAQFSDWQSGGITSGLIQEYVPIPSFNDYRTDQSIMDPTMSEISGFHYSNSSNQSFGFTSVLSTPSSSSTPLNSNSTYGSSEDERENYGSNNLLKFDVPEILDINYEFM* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01978 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pte13g01978 350 CDD SANT 69 112 IPR001005 -
Pte13g01978 350 FunFam MYB-related transcription factor 13 66 - -
Pte13g01978 350 Gene3D - 69 116 - -
Pte13g01978 350 CDD SANT 16 61 IPR001005 -
Pte13g01978 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pte13g01978 350 FunFam Transcription factor MYB39 69 130 - -
Pte13g01978 350 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 282 - -
Pte13g01978 350 Gene3D - 14 66 - -
Pte13g01978 350 SMART sant 66 114 IPR001005 -
Pte13g01978 350 SMART sant 13 63 IPR001005 -
Pte13g01978 350 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte13g01978 350 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pte13g01978 350 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte13g01978 350 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte13g01978 350 MobiDBLite consensus disorder prediction 305 328 - -
Pte13g01978 350 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01978 Pte-Chr13 32511043 32512540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01978 1 346 MYB Transcription Factor Family AT4G21440 57.300 6.08e-124 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte13g01978 Myb_DNA-binding 6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01978 K09422 - pvy:116135192 440.269