LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte13g01976	ATGGGTAAGAAAAAAGTAGTAGTGGATGATCTGCCGGACCAGCTTCGCTGTGGCCGGAGTGACGGGCGGTCATGGCGATGTCGCCGGAGAGTATTGGACGGAATGAAGTTGTGTGAGATTCATTACCTTCAAGGTCGTCATAGGCAAATTAAGATACAGGTACCAGAGGAACTGAAAATACAGAGGAATAGCACGAATGTGGTTAAGAAGAGCGGCTCTGTCTCCAATAATGCAGAAATTAGGGCTCGAAAAGTTAGCAAAATGGCGAAGATGATGAAGAGGAAGAAGCGATCGTCGGCTGGAGAGTTGGAAGCTATGGATGAAGCTTTGAGGAAGAAACAGTCAAAGAAAAGGGATATGCAGTTGGACTTGATAAGGATGGCGTTGAAAAGAGAAGTGGAGAAGAGGAAGAAGAATAAGCAAGGCGGTGAGATTAAGGGGAAGAAGAGAAGTATGAAGAAGATGAAGAAGAAGAAGGAGAAGGATAAGCAGAAAGAGTTGACAGCAGATGAGGAACATACTGAGAAAGAGTTGACTAGAGAATTGCCTAATGGATTCATGGCAATATCTCCAGTTCCATCTGCTAGAGATTCAGGCAATGTGGGTTCTCCTTGTGATGTTAAAGTCGGGGTTAATTTGGAAACTGTAAAACCTCGGCGATTTCGGTCGAAGAATGTCGAAAGACTACCTGTTGCTACGCCGCAGGTTTTGCCTTATGGAAATTTGAAAAAGTGTAGGAGGAACAAGTGTCATGGGTGTCAGAGAAGTGTCCCTTGGAATATGATCAAGTGTTCGAGTTGTAAAAAGGAGTTGTTCTGTATGGATTGCATTAAAGAACGGTGCTTTGACACACAGAATGAGGTGAAGATGGCATGTCCTGTATGTCGAGGGACCTGCACCTGTAATGAGTGCTTGGCAAGTCAAAATAAAGAATCTGAAAGTAAGGAACTTGCAGCAGGTAAAAGTAGAGTTGATAGGATATTGCAGGTTCATTATATGATATACATGCTACTTCCGGTCGTGAAACAAGTAATTGAAGAGAGAAATGCTGAGCTAGAAACAGAGGCAGTCCTGAGAGGGGACGCAAGATCTTCTGATATTCATGTCAAGGAAGCTGAGTTTGGATGCAATGAAGCTTGCTGCAATAATTGCGACTTCCCCATTCTTGATATCCATAGAAGTTGCCCAAAATGTTCTTATAACCTTTGCATAAGCTGTTGCTGCATTTTTCGCCGCGGTAGTGTCCCAGTGGAAAATGGCTCAGGTCTCTCCAGATCAATTAGATGCAGAAAAGCTTATAGAGAAAATGAAACACATGTATCAGATGAGTTAGATGGTGCTGAAAAGCAACATGTCCACTGCACGCAAGTTGCTGCATCATCATTATATGACTGGAAGTCTGAAGAAAGTTCTGGGGGTATATCATGTCCACCCGCAGAACTTGGTGGCTGTGGCAACGGCCACCTTGAACTGCAATGTGTCTTCCCGTTTGATTGGATTAAAGATTTGGAAGTAAGTGCTGAAGAAATAGTTTGCAGCTATGAGTTTCCTGAAACCTTGGACAAAACTTCATCCTGCTCACTATGTGTTCGAGCAGATCATAAAGATGATGGATCTGTAATGTTGCAAGAAGCAGCAGCAAGAGAAGATTCAAATGATAACTACTTATTTTATCCCATGCCATTGTACATAACTGGTGATAAGTTTGAGCACTTTCAGAAGCACTGGGGAAAGGGCCATCCTGTTATAGTTCGTAATGTGCTTCAAACCACATCGTGTTTGAGCTGGGATCCACTGGTCATGTTCTGTGGATATCTCGAGAAAAGCATTGCATTGCATGAGAATAACAAAGATTTACTTAGAGCCTGCTTGGATTGGTGTGAGGTTGAAATAAACATTAGACAATATTTTTGTGGGTCTCTAAGGAGTCACCCAGAGAGAAGTACGTTGAATGAGATGCTGAAGTTAAAGGGTTGGATGTCTTCTGATCTATTCAAAGAGCAGTTTCCAGCTCACTTTGCAGAATTAATGAACGGTCTACCACTTCAAGAATATATAAACCCTTCATCTGGTCTTTTGAATATAGCAGCAAATTTGCCATCAGATATCCCGAAGCCTGAGCAAGGACCAAGTGTATATATCTCTTATACCTGCACCGATGACGTAGTACAGGCTGATTATGTCACAAAATTGTCATGTGCCTCATATGATGTGGTTAATATTTTGGTCCACAGTACAGATGTACCTATCTCGACGGAGCAATGTATTAAAATAAGGAAGTTGCTAAAAAGGCACAATGCACTGTGTCAAACTGAACCTGCTGAAACGAATAAAGAGCATACGAAGGGAAAATCACCTTTGGTTGCCAAGAATACAGAAGAAGCAGTATTGCAGAATCTTGTCAATGAGACAGAATCAGCCTCGACCCCAAGTCAAGCAGACAGCAATGCTGATAGACGATGTGATTCTGATTCTGATTTTGACAGTGAACCTTGTCCTCTTGCCATCTGCTCTTTTCAGAACACGGCAAGGTCTGCAGATGAGGGTTGTAGAAATCAAACACGTGCCTCAAGTGATGACATAAAACAAAAACTGGCCGGGTACTCTGTCGCTCAATGGGATGTCTTCCGCAGGCAAGATGTTCCAAAACTAGTGGAATACCTTAAGAGACACGCTAATGAATTCCCTGGAATGTATAGGTATCACCAGCAGCAGATAATACACCCAATTTTAGACGAGATCTTTTTTCTGGACAATTCTCACATAATGAAGCTCAAGGAGGAGTTCAAAATTGAACCCTGGACATTCGAGCAACATGTTGGGGAGGCTGTGATCATTCCTGCCGGTTGTCCATACCAGATTAAAAATCCTATGGGTTGTGTTCATGTGGTGTTGGACTTCGTATCCCCTGAAAATGTGACCGAGTGTATCCAGATGATTGATGAAATCCGGTTGCTTCCTGGAGATCATAAAGCAAAATTTGACACCCGGCAGGTGAAGAGAATGGCTCTTCACTGCATCGGTGAAGCAATCAAAGTAATTCATGAGCTCAAATGCACAATGTAA	3066	0.4263	MGKKKVVVDDLPDQLRCGRSDGRSWRCRRRVLDGMKLCEIHYLQGRHRQIKIQVPEELKIQRNSTNVVKKSGSVSNNAEIRARKVSKMAKMMKRKKRSSAGELEAMDEALRKKQSKKRDMQLDLIRMALKREVEKRKKNKQGGEIKGKKRSMKKMKKKKEKDKQKELTADEEHTEKELTRELPNGFMAISPVPSARDSGNVGSPCDVKVGVNLETVKPRRFRSKNVERLPVATPQVLPYGNLKKCRRNKCHGCQRSVPWNMIKCSSCKKELFCMDCIKERCFDTQNEVKMACPVCRGTCTCNECLASQNKESESKELAAGKSRVDRILQVHYMIYMLLPVVKQVIEERNAELETEAVLRGDARSSDIHVKEAEFGCNEACCNNCDFPILDIHRSCPKCSYNLCISCCCIFRRGSVPVENGSGLSRSIRCRKAYRENETHVSDELDGAEKQHVHCTQVAASSLYDWKSEESSGGISCPPAELGGCGNGHLELQCVFPFDWIKDLEVSAEEIVCSYEFPETLDKTSSCSLCVRADHKDDGSVMLQEAAAREDSNDNYLFYPMPLYITGDKFEHFQKHWGKGHPVIVRNVLQTTSCLSWDPLVMFCGYLEKSIALHENNKDLLRACLDWCEVEINIRQYFCGSLRSHPERSTLNEMLKLKGWMSSDLFKEQFPAHFAELMNGLPLQEYINPSSGLLNIAANLPSDIPKPEQGPSVYISYTCTDDVVQADYVTKLSCASYDVVNILVHSTDVPISTEQCIKIRKLLKRHNALCQTEPAETNKEHTKGKSPLVAKNTEEAVLQNLVNETESASTPSQADSNADRRCDSDSDFDSEPCPLAICSFQNTARSADEGCRNQTRASSDDIKQKLAGYSVAQWDVFRRQDVPKLVEYLKRHANEFPGMYRYHQQQIIHPILDEIFFLDNSHIMKLKEEFKIEPWTFEQHVGEAVIIPAGCPYQIKNPMGCVHVVLDFVSPENVTECIQMIDEIRLLPGDHKAKFDTRQVKRMALHCIGEAIKVIHELKCTM*	1022

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte13g01976	1021	MobiDBLite	consensus disorder prediction	87	119	-	-
	Pte13g01976	1021	Pfam	JmjC domain, hydroxylase	868	966	IPR003347	-
	Pte13g01976	1021	MobiDBLite	consensus disorder prediction	803	828	-	-
	Pte13g01976	1021	MobiDBLite	consensus disorder prediction	132	179	-	-
	Pte13g01976	1021	Pfam	WRC	12	50	IPR014977	-
	Pte13g01976	1021	MobiDBLite	consensus disorder prediction	161	179	-	-
	Pte13g01976	1021	MobiDBLite	consensus disorder prediction	95	119	-	-
	Pte13g01976	1021	ProSiteProfiles	JmjC domain profile.	688	984	IPR003347	-
	Pte13g01976	1021	SMART	cupin_9	669	984	IPR003347	-
	Pte13g01976	1021	Coils	Coil	103	123	-	-
	Pte13g01976	1021	ProSiteProfiles	WRC domain profile.	11	55	IPR014977	-
	Pte13g01976	1021	MobiDBLite	consensus disorder prediction	132	148	-	-
	Pte13g01976	1021	SUPERFAMILY	Clavaminate synthase-like	568	1008	-	-
	Pte13g01976	1021	Gene3D	Cupin	562	993	-	-
	Pte13g01976	1021	PANTHER	JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN	13	1018	IPR045109	GO:0032454\|GO:0033169
	Pte13g01976	1021	ProSiteProfiles	Zinc finger RING-type profile.	250	296	IPR001841	-
	Pte13g01976	1021	Coils	Coil	145	177	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte13g01976	Pte-Chr13	32478038	32484406	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Jumonji	Pte13g01976		JmjC	2.7e-08	CL0029

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte13g01976	K15601		-	cave:132170562	1097.03