Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01957 ATGATTTCTGATATCATTTTTAGCTGTGGTTTCATTTTTGTTTCTTTTTTTCCCACTTACTGTTTGCACAGTTTGGAGTTGGATGATCCATACGTCTCAGTTGGTTTGAAAGAAACTGGTTCCCAAAAAAGGCCGAGATCTGGATCCTGCAATCCTCCTGCTTCTAAAGCATGTAGAGAGAAAATGAGAAGGGATCGTCTTAATGACAGGTTCTTGGAATTGGGTTCTATCCTAGACCCAGGAAGAACTCCCAAAATGGACAAAACTCTAATATTAGGGGATGCTATTCGCGTGGTGTCTCAGTTACGCATCGAAACCCAACAACTAAGGGAGTCCAATGAGAATCTTCAGGAGAAAATCAATGAATTGAAGGCTGAGAAGAATGAGCTTCGCGATGAGAAACAAAGACTCAAGGCACAGAAACAGAACTTGGAGCAAAAGCTAAAAGGCTTAAACCAACATGACTTCATGCCCCACCCTCCTGCACTGCCTGCTGGACCTTCCCCATTTTCTGCATCAGGACAAGTTGTTGGCACTAAGCTTGTGCCATTCATCCGGTACCCTGGAATATCAATGTGGCAGTTTTTGCCGCCTGCTGCAGTTGATACTTCACAAGACCATGTGCTACGCCCTCCTGTTGCATAA 645 0.4403 MISDIIFSCGFIFVSFFPTYCLHSLELDDPYVSVGLKETGSQKRPRSGSCNPPASKACREKMRRDRLNDRFLELGSILDPGRTPKMDKTLILGDAIRVVSQLRIETQQLRESNENLQEKINELKAEKNELRDEKQRLKAQKQNLEQKLKGLNQHDFMPHPPALPAGPSPFSASGQVVGTKLVPFIRYPGISMWQFLPPAAVDTSQDHVLRPPVA* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01957 214 SMART finulus 57 108 IPR011598 GO:0046983
Pte13g01957 214 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 51 102 IPR011598 GO:0046983
Pte13g01957 214 Pfam Helix-loop-helix DNA-binding domain 55 102 IPR011598 GO:0046983
Pte13g01957 214 Coils Coil 99 154 - -
Pte13g01957 214 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 53 123 IPR036638 GO:0046983
Pte13g01957 214 PANTHER BHLH TRANSCRIPTION FACTOR 22 214 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Pte13g01957 214 CDD Prefoldin 107 162 - -
Pte13g01957 214 CDD bHLH_AtILR3_like 56 131 - -
Pte13g01957 214 MobiDBLite consensus disorder prediction 38 57 - -
Pte13g01957 214 Gene3D - 54 134 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01957 Pte-Chr13 32275675 32276756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01957 37 215 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 63.536 3.37e-77 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte13g01957 HLH 1.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01957 - - qsa:O6P43_012488 263.848