LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte13g01935	ATGTTGCAGGTCTCGATTCTACGAGTGAAGAAGTTGAAGGCTTTGAAGCCTCAAATCTTTGCTTTCTATGGAAACTCTCACTTCTCAACAGCCGCCGAGCCGTCATCAAGACAACACACTGCTCCGAAGGTTCCCAATCTTATTGGAGGCAACTTTGTTGATTCGAAATCATCAGCTTTCATTGATGTTATAAACCCTGCTACACAAGAAGTAGTTTCACAAGTTCCCTTGACCACAAATGACGAGTTTAAAGCTGCAGTAGCTGCGGCAAAGCAAGCATTCCCATCATGGCGTAATACCCCAATTACTACACGTCAACGTGTAATGCTCAAGCTTCAAGAGCTTATTCGCCGAGATATGGATAAACTGGCCTTGAATGTAACTACTGAACAAGGGAAGACATTGAAGGATGCACAAGGAGATGTCTTTCGTGGGCTAGAGGTGGTGGAACATGCTTGTGGAATGGCTACTCTGCAGATGGGGGAGTATGTTCCCAATGTTTCACATGGAATTGATACTTTTAGCATTAGAGAACCTCTCGGCATTTGTGCTGGCATTTGTCCTTTCAATTTTCCAGCAATGATTCCCTTATGGATGTTCCCAATTGCAGTTACATGTGGAAACACTTTCATCTTAAAACCATCTGAGAAAGATCCAGGTGCTTCTGTAATGCTAGCAGAATTAGCACTGGAGGCTGGGCTACCTGATGGTGTCTTAAACATAGTGCATGGGACACATGACATTGTCAATGCTATCTGTGATGACGACGACATAAAAGCTGTATCATTTGTGGGTTCAAATGTTGCTGGTATGCACATATATGCTAGAGCATCAGCTAAAGGGAAACGAGTTCAGTCTAATATGGGTGCCAAGAATCATGCGATCATCATGCCTGATGCAAATGTTGACGCTACGTTAAATTCTCTAGTTGCTGCTGGTTTTGGTGCTGCTGGACAGAGGTGTATGGCTCTAAGTACTGTTGTCTTTGTTGGAGGTTTGAAGCACTGGGAAAATGAATTAGTGGAACGTGCCAAAGCTCTTAAAGTAAATGCTGGAATTGAACCTGATACTGATCTTGGTCCTGTGATCAGCAAACAGGCAAAGGAACGGATACAAGCATTAATTCAATCTGGGGTTGAAAGTGGTGCAAGGCTATTACTTGATGGTAGAGGAATTAAGGTTCCTGGATATGAATCAGGCAATTTTATTGGTCCCACCATCTTATCAGATATCACTGATGAAATGCAGTGCTACAAGGAGGAAATTTTTGGCCCAGTTCTCCTCTGCATGGAGGCTGAAAGCTTAGAGCATGCTATCGACATCGTCAACAAAAATAAATATGGAAATGGGGCTTCTATATTTACAACATCTGGTGTTGCTGCAAGGAAATTCCAGACTGACATTGAGGCAGGGCAGGTTGGCATCAATGTTCCTATTCCTGTTCCGTTGCCTTTTTTCTCATTCACAGGCAGCAAGGCGTCTTTTGCTGGCAATCTGAATTTCTATGGTGAAACCCTGCTCGGACATGCTTTATTTCCGATGCATCAAAATCGACTCTGTGCTAACTTTACTGCTGATCAAACTGTTTTTGTTGACTTACAGGCAAGGCTGGAGTTAGTTTTTTCACCCAACTCAAAACAGTAA	1644	0.43	MLQVSILRVKKLKALKPQIFAFYGNSHFSTAAEPSSRQHTAPKVPNLIGGNFVDSKSSAFIDVINPATQEVVSQVPLTTNDEFKAAVAAAKQAFPSWRNTPITTRQRVMLKLQELIRRDMDKLALNVTTEQGKTLKDAQGDVFRGLEVVEHACGMATLQMGEYVPNVSHGIDTFSIREPLGICAGICPFNFPAMIPLWMFPIAVTCGNTFILKPSEKDPGASVMLAELALEAGLPDGVLNIVHGTHDIVNAICDDDDIKAVSFVGSNVAGMHIYARASAKGKRVQSNMGAKNHAIIMPDANVDATLNSLVAAGFGAAGQRCMALSTVVFVGGLKHWENELVERAKALKVNAGIEPDTDLGPVISKQAKERIQALIQSGVESGARLLLDGRGIKVPGYESGNFIGPTILSDITDEMQCYKEEIFGPVLLCMEAESLEHAIDIVNKNKYGNGASIFTTSGVAARKFQTDIEAGQVGINVPIPVPLPFFSFTGSKASFAGNLNFYGETLLGHALFPMHQNRLCANFTADQTVFVDLQARLELVFSPNSKQ*	548

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte13g01935	547	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 1	48	497	IPR016162	GO:0016491
	Pte13g01935	547	SUPERFAMILY	ALDH-like	39	499	IPR016161	GO:0016491
	Pte13g01935	547	PANTHER	MALONATE-SEMIALDEHYDE DEHYDROGENASE	7	505	IPR010061	GO:0004491
	Pte13g01935	547	FunFam	Methylmalonate-semialdehyde dehydrogenase [acylating]	48	295	-	-
	Pte13g01935	547	FunFam	Methylmalonate-semialdehyde dehydrogenase (Acylating)	289	489	-	-
	Pte13g01935	547	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 2	289	489	IPR016163	GO:0016620
	Pte13g01935	547	Pfam	Aldehyde dehydrogenase family	52	498	IPR015590	GO:0016491
	Pte13g01935	547	CDD	ALDH_F6_MMSDH	44	503	IPR010061	GO:0004491
	Pte13g01935	547	ProSitePatterns	Aldehyde dehydrogenases cysteine active site.	314	325	IPR016160	GO:0016491
	Pte13g01935	547	NCBIfam	CoA-acylating methylmalonate-semialdehyde dehydrogenase	46	504	IPR010061	GO:0004491

Showing 1 to 10 of 10 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte13g01935	Pte-Chr13	32088949	32094374	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte13g01935	6	507	Aldehyde Dehydrogenase Gene Family	AT2G14170	79.167	0.0	828

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte13g01935	K00140		-	qsa:O6P43_012446	872.463

Showing 1 to 1 of 1 entries