Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01921 ATGTTAAAACAAAATGCTAGTAGGAGTAGCACACATTTTCAGCTGAATGGGGAAAATGCTCATCGTTTAACAGTTTTGTCTCTTCAGGGTACAAAAATGGTTCTTGCTCAATTTGTCGTGATGGGTTTTCTGGCAACGTTCTCATCTGCTTATGCTTATGTTGAGGGCTGGATTGATGCTCACGCCACATTCTATGGAGGAAGCGATGCTTCTGGAACAATGGGTGGGGCTTGTGGGTATGGGAATCTTTATAGCCAAGGCTATGGAACCAATACTGCAGCTTTGAGCACAGCTCTGTTCAACAATGGACTGAACTGTGGGTCTTGCTACGAGATTAAGTGTGTAAATGACCAGCAATGGTGTCTTCCCAGCTCTATTGTGATCACAGCTACCAATTTCTGTCCCCCGAACAATGCCCTCCCCAACAATGATGGGGGTTGGTGTAACCCTCCCCTCTACCACTTTGACCTCTCTCAGCCTGTCTTTCAGCATATTGCACAATACAGAGCTGGAATTGTCCCAGTAGCTTACAGAAGGGTGCCCTGTGCAAGAAGGGGAGGCATGAGGTTCACCATCAATGGACATTCGTACTTCAACCTTGTGCTCATCACTAACGTAGGTGGTGCTGGTGATGTGCATGCTGTGGATGTCAAAGGGTCTAGAACTGGTTGGATGCCCATGTCAAGGAACTGGGGTCAAAATTGGCAGACAAATGACTATCTCAATGGTCAAGCACTGTCCTTCAAAGTCACCACCAGTGATGGCCGCGCTGTGGTCTCCTACAATGTTGCTCCGGCTAGCTGGTCCTTTGGGCAGACTTTTGCTGGGGCTCAGTTCCTCTAG 843 0.4792 MLKQNASRSSTHFQLNGENAHRLTVLSLQGTKMVLAQFVVMGFLATFSSAYAYVEGWIDAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLNCGSCYEIKCVNDQQWCLPSSIVITATNFCPPNNALPNNDGGWCNPPLYHFDLSQPVFQHIAQYRAGIVPVAYRRVPCARRGGMRFTINGHSYFNLVLITNVGGAGDVHAVDVKGSRTGWMPMSRNWGQNWQTNDYLNGQALSFKVTTSDGRAVVSYNVAPASWSFGQTFAGAQFL* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01921 280 SUPERFAMILY PHL pollen allergen 184 275 IPR036749 -
Pte13g01921 280 FunFam Expansin 187 279 - -
Pte13g01921 280 FunFam Expansin 46 183 - -
Pte13g01921 280 SUPERFAMILY Barwin-like endoglucanases 56 205 IPR036908 -
Pte13g01921 280 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 75 187 IPR007112 -
Pte13g01921 280 PANTHER EXPANSIN-A15 38 279 IPR002963 GO:0009664
Pte13g01921 280 PRINTS Expansin signature 87 101 IPR002963 GO:0009664
Pte13g01921 280 PRINTS Expansin signature 198 219 IPR002963 GO:0009664
Pte13g01921 280 PRINTS Expansin signature 162 175 IPR002963 GO:0009664
Pte13g01921 280 PRINTS Expansin signature 114 125 IPR002963 GO:0009664
Pte13g01921 280 PRINTS Expansin signature 233 254 IPR002963 GO:0009664
Pte13g01921 280 PRINTS Expansin signature 262 278 IPR002963 GO:0009664
Pte13g01921 280 PRINTS Expansin signature 126 136 IPR002963 GO:0009664
Pte13g01921 280 PRINTS Expansin signature 186 198 IPR002963 GO:0009664
Pte13g01921 280 PRINTS Expansin signature 145 162 IPR002963 GO:0009664
Pte13g01921 280 PRINTS Expansin/Lol pI family signature 262 276 IPR007118 GO:0005576
Pte13g01921 280 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576
Pte13g01921 280 PRINTS Expansin/Lol pI family signature 96 114 IPR007118 GO:0005576
Pte13g01921 280 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576
Pte13g01921 280 PRINTS Expansin/Lol pI family signature 56 71 IPR007118 GO:0005576
Pte13g01921 280 PRINTS Expansin/Lol pI family signature 170 186 IPR007118 GO:0005576
Pte13g01921 280 Gene3D - 43 183 IPR036908 -
Pte13g01921 280 SMART dpbb_1 92 177 IPR007112 -
Pte13g01921 280 Pfam Lytic transglycolase 92 177 IPR009009 -
Pte13g01921 280 CDD DPBB_EXPA_N 56 182 - -
Pte13g01921 280 Gene3D - 187 279 IPR036749 -
Pte13g01921 280 Pfam Expansin C-terminal domain 188 265 IPR007117 -
Pte13g01921 280 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 197 276 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01921 Pte-Chr13 31968820 31971022 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01921 32 279 Expansin Gene Family AT2G03090 78.629 5.20e-149 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01921 - - tcc:18610379 458.759