Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01918 ATGGAGGATTCTGAAGGAGCACTAAGCTTCGACTTCGAAGGAGGTATTGATACTGCCCTCGCCAACAACACCGCATCTGTACCACCGAATCAGTCCGATCCAGCTGGTACTGCAGTTTCCAACACAACCAATGTTGCTGCAGCCACCGGAACCATCGCCAACACATCTGATAATGCTGGGAGTGGCAATATTTCCGGTCGGCGAAGCTACCGGCAGACTGTGTGTAGGCACTGGCTTCGCAGTCTCTGTATGAAAGGTGACGCTTGTGGGTTCTTACACCAATACGATAAATCACGGATGCCAGTTTGCCGGTTCTTTAGATTATACGGCGAGTGTCGTGAAAATGATTGTGTTTATAAGCATACCAATGAAGATATCAAGGAGTGTAACATGTATAAATTAGGATTTTGTCCAAATGGTCCTGATTGCCGCTATAGACATGCCAAATTGCCCGGACCTCCTCCACCTGTTGAAGAGGTTCTTCAAAAGATACAGTATTTATATGCTCACAATTATGGCCCCTCCAATAAATATTTCCAACAACGGGGTGCTAACTTTAACCATCAAGCTGAAAAGTCTCAGAATCAGCAAGGTCCTACTCTTAACTCCATTAATCAAGGAGCGGCTGGCAAAGCATTGACCACTGAATCTGGTAATGTGCAGCAGCAGCAGCAGCAACAGCAACAACAACAACAGGTTCAACAGTCTCAACAACAAGTTGGACAAATTCAAACACAAAATCTTCCAAATGGTCAGAGTACACAGCCCTGCAGATCTGCCATGCCTTTGCCCCAAGGAATATCTAGGTATTTTATTGTAAAAAGCTGCAACCGTGAAAATTTGGAATTATCTGTACAGCAAGGAGTATGGGCTACCCAAAAGAGCAATGAAGCTAAATTGAATGAAGCTTTTGACTCTGCCGAAAATGTGATATTGATTTTCTCTGTCAATCGGACTCGACACTTCCAGGGTTGTGCAAAAATGACATCTAGAATTGGTGGCTATGTCGGTGGTGGAAACTGGAAATATGCCCATGGAACTGCACATTATGGGCGTAACTTTTCATTAAAGTGGCTCAAGTTATGTGAGCTATCATTCCACAAGACTCGCCACTTAAGGAATCCATTCAACGAAAACCTACCTGTGAAGATAAGTAGAGACTGTCAGGAGCTGGAGCCCTCTGTGGGGGAGCAGTTGGCTTCCTTACTTTATCTGGAGCCTGATAGCGAACTTATGGCAATGTCACTTGCAGCTGAGTCAAAACGGGAAGAGGATAAGGCAAAGGGAGTCAACACAGATAGCGGAGGAGAAAATCCAGACATTGTACCATTTGAGGACAATGAAGAGGAGGAAGAGGAAGAAAGTGAAGAGGAGGACGAAAACTTTGGCCAGGTTGCTGGGGTAGCTAATCAAGGAAGGGGTAGAGGTAGAGGAGTCATGTGGCCTCCTCATATGCCTATGGGACGTGGAGCCAGAGCAATGCCTGGAATGCAGGGTTTCCCCCCAATGATGATGGGTGCTGATGGAATGCCCTATGGACCCATTACACCTGATGGATTTGGTATGCCGGATTTATTTGGAATGGGACCTCGGGGTTTTGGTCCATATGGTCCAAGATTTATGGGTGACTTTTCAGCTCCTCCAGCAATGATGTTTCGTGGCCGACCCTCACAACCTGGGGTATATCCAGGTGGTGGATATATGATGATGAATCCAGGTCGTGCCCCTTTCATGGGAGGGTTGGGTGTTCCAGGACCAAATCCAGGTCGGGGTGGTCGACCTATTGGTATGCCTCATATGTTCCCTCCGCCGCCACCATCTTCTCAGAACCGGGTTGTGAAAAGAGATCAAAGAACATCAGCTAATGACAGATACAATGCAGGATCAGAACTTAAGGGTCAAGACTTTCAAAGCTCTGCTGGTGGACCTGATGATGGTTCCCAACAGCAAGGATTCAAAGGTCAACATGAAGATCATTTTGGTGGCACAGACAATCTCAGGAATGATGATAGTGAAAGTGAAGATGAAGCACCCAGAAGGTCACGACATGGCGAAGGAAAAAAGAAACGGCGGAACTTGGAAGACATTGCAACCAGCTCAAACCACTAG 2109 0.4642 MEDSEGALSFDFEGGIDTALANNTASVPPNQSDPAGTAVSNTTNVAAATGTIANTSDNAGSGNISGRRSYRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECRENDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQYLYAHNYGPSNKYFQQRGANFNHQAEKSQNQQGPTLNSINQGAAGKALTTESGNVQQQQQQQQQQQQVQQSQQQVGQIQTQNLPNGQSTQPCRSAMPLPQGISRYFIVKSCNRENLELSVQQGVWATQKSNEAKLNEAFDSAENVILIFSVNRTRHFQGCAKMTSRIGGYVGGGNWKYAHGTAHYGRNFSLKWLKLCELSFHKTRHLRNPFNENLPVKISRDCQELEPSVGEQLASLLYLEPDSELMAMSLAAESKREEDKAKGVNTDSGGENPDIVPFEDNEEEEEEESEEEDENFGQVAGVANQGRGRGRGVMWPPHMPMGRGARAMPGMQGFPPMMMGADGMPYGPITPDGFGMPDLFGMGPRGFGPYGPRFMGDFSAPPAMMFRGRPSQPGVYPGGGYMMMNPGRAPFMGGLGVPGPNPGRGGRPIGMPHMFPPPPPSSQNRVVKRDQRTSANDRYNAGSELKGQDFQSSAGGPDDGSQQQGFKGQHEDHFGGTDNLRNDDSESEDEAPRRSRHGEGKKKRRNLEDIATSSNH* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01918 702 MobiDBLite consensus disorder prediction 580 702 - -
Pte13g01918 702 MobiDBLite consensus disorder prediction 622 654 - -
Pte13g01918 702 Gene3D - 62 128 - -
Pte13g01918 702 MobiDBLite consensus disorder prediction 657 696 - -
Pte13g01918 702 ProSiteProfiles Zinc finger C3H1-type profile. 123 150 IPR000571 GO:0046872
Pte13g01918 702 MobiDBLite consensus disorder prediction 417 479 - -
Pte13g01918 702 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 47 685 IPR045168 -
Pte13g01918 702 ProSiteProfiles YTH domain profile. 268 403 IPR007275 GO:0003723
Pte13g01918 702 Coils Coil 219 246 - -
Pte13g01918 702 MobiDBLite consensus disorder prediction 417 431 - -
Pte13g01918 702 Pfam YT521-B-like domain 268 402 IPR007275 GO:0003723
Pte13g01918 702 ProSiteProfiles Zinc finger C3H1-type profile. 69 96 IPR000571 GO:0046872
Pte13g01918 702 Gene3D ph1033 like domains 248 406 - -
Pte13g01918 702 CDD YTH 269 403 IPR007275 GO:0003723
Pte13g01918 702 SUPERFAMILY CCCH zinc finger 68 99 IPR036855 GO:0046872
Pte13g01918 702 SMART c3hfinal6 69 95 IPR000571 GO:0046872
Pte13g01918 702 SMART c3hfinal6 125 149 IPR000571 GO:0046872
Pte13g01918 702 SMART c3hfinal6 97 123 IPR000571 GO:0046872
Pte13g01918 702 FunFam Cleavage and polyadenylation specificity factor 30 kDa subunit 64 125 - -
Pte13g01918 702 MobiDBLite consensus disorder prediction 442 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01918 Pte-Chr13 31887874 31899327 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte13g01918 YTH 2e-18 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01918 K14404 - gmx:100802826 966.837