Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01889 ATGGGGAGGTCTCCTTGCTGTGAAAAAGCTCATACAAACAAAGGCGCATGGACCAAAGAGGAGGATGATCGGCTGATAGCTTATATCAAGGCTCACGGTGAGGGCTGCTGGAGATCTCTACCAAAAGCAGCTGGCCTTCTTCGGTGCGGAAAAAGTTGCCGGCTTCGTTGGATCAACTATCTCAGACCTGATCTTAAGCGTGGAAATTTCACTGAAGAAGAAGATGAACTCATCATCAAACTCCACAGTCTTCTTGGAAACAAATGGTCACTTATAGCAGGGAGATTGCCTGGAAGGACAGATAATGAGATAAAGAACTATTGGAACACCCATATAAGACGAAAGCTATTGAATAGAGGAATTGACCCTGCGACGCACAGGCCTCTGAATGAGGCTACTCAAAGTCAGGAGGCTGCCGCAATATCTTTTGCTGCCTCTACTCCTACACCTCAACAAGAAGAGAATCATAACACAAATGAGTTTGGGATGGTGGCCAAGGATGATGCAAAAAACACAGTGCAAGAAAGATGCCCTGACTTGAACCTGGAGCTAAGAATTAGCCCCCCACATCAGAGCCTGATTGATCAGCCATTGAAGACTGGAGGCAGCAGCATCTGTTTTGCTTGCAGTTTGGGATTGCAGAACAGTGAGGATTGCAGCTGTGGGATGGAGCATGATGCTGGGAGTACTAGCGGTAGTGGCAGTACTGGTTATGATTTCTTGGGCTTGAAATATGGTAGTATTTTGGATTACAGAAGCTTGAAAATGAAATGA 774 0.4587 MGRSPCCEKAHTNKGAWTKEEDDRLIAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEATQSQEAAAISFAASTPTPQQEENHNTNEFGMVAKDDAKNTVQERCPDLNLELRISPPHQSLIDQPLKTGGSSICFACSLGLQNSEDCSCGMEHDAGSTSGSGSTGYDFLGLKYGSILDYRSLKMK* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01889 257 CDD SANT 69 112 IPR001005 -
Pte13g01889 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pte13g01889 257 FunFam MYB-related transcription factor 13 66 - -
Pte13g01889 257 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 166 - -
Pte13g01889 257 CDD SANT 16 61 IPR001005 -
Pte13g01889 257 Gene3D - 69 141 - -
Pte13g01889 257 Gene3D - 14 66 - -
Pte13g01889 257 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte13g01889 257 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte13g01889 257 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pte13g01889 257 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte13g01889 257 FunFam MYB transcription factor MYB48 69 170 - -
Pte13g01889 257 SMART sant 66 114 IPR001005 -
Pte13g01889 257 SMART sant 13 63 IPR001005 -
Pte13g01889 257 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Pte13g01889 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01889 Pte-Chr13 31515231 31516721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01889 1 258 MYB Transcription Factor Family AT4G38620 63.509 7.53e-117 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte13g01889 Myb_DNA-binding 2.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01889 K09422 - qsa:O6P43_002116 411.379