Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01876 ATGTCCAAGGAAGTGAGTGGAGAAGGACAAACTCACCATGGAAAAGACTACGTTGATCCCCCACCAGCTCCTCTAATCGACGTAGCTGAGCTAAAGCTTTGGTCTTTCTACAGAGCCCTCATAGCTGAGTTTATAGCCACCCTTCTCTTTCTCTATGTCACTGTTGCCACTGTCATCGGTCACAAGAAGCAAGCTGGACCTTGTGATGGGGTTGGCCTTTTGGGCATAGCATGGGCTTTCGGTGGCATGATCTTCATTCTTGTCTACTGCACTGCCGGTATCTCTGGTGGACACATCAACCCTGCTGTGACATTCGGGTTGTTCCTCGCTAGGAAGGTGTCCTTGATTCGGGCTTTGGCATACATGGTCGCTCAGTGTGCTGGAGCTATCTGTGGTGTTGGATTGGTCAAGGCTTTCATGAAGCACTCCTACAACTCACTTGGTGGGGGTGCTAACGGTGTCAATCTAGGTTACAGCAAAGGCACAGCTTTGGGTGCCGAGATTATTGGTACCTTTGTGCTTGTCTACACTGTCTTCTCAGCCACTGACCCCAAGCGAAGTGCTCGCGATTCCCATATCCCTGTTTTGGCCCCATTGCCAATTGGTTTTGCTGTGTTTGTGGTGCACTTAGCCACTATCCCTGTCACTGGCACAGGCATCAACCCGGCTAGGAGCTTCGGTGCTGCTGTTATCTACAACAATGAGAAAGCATGGGATGACCAGTGGATCTTCTGGGTTGGTCCGTTTCTGGGAGCATTGGCAGCAGCGGCATATCACCAATACATTCTAAGAGCTGCTGCTATTAAAGCATTGGGATCCTTCAGGAGCAACCCTACAAACTAA 843 0.5018 MSKEVSGEGQTHHGKDYVDPPPAPLIDVAELKLWSFYRALIAEFIATLLFLYVTVATVIGHKKQAGPCDGVGLLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRALAYMVAQCAGAICGVGLVKAFMKHSYNSLGGGANGVNLGYSKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFVVHLATIPVTGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPFLGALAAAAYHQYILRAAAIKALGSFRSNPTN* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01876 280 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 9 269 IPR034294 -
Pte13g01876 280 NCBIfam MIP family channel protein 42 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte13g01876 280 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Pte13g01876 280 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte13g01876 280 PRINTS Major intrinsic protein family signature 166 184 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte13g01876 280 PRINTS Major intrinsic protein family signature 242 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte13g01876 280 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte13g01876 280 PRINTS Major intrinsic protein family signature 202 224 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte13g01876 280 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte13g01876 280 CDD MIP 38 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte13g01876 280 FunFam Probable aquaporin PIP1-2 23 278 - -
Pte13g01876 280 SUPERFAMILY Aquaporin-like 30 264 IPR023271 -
Pte13g01876 280 Pfam Major intrinsic protein 31 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte13g01876 280 Gene3D Glycerol uptake facilitator protein. 23 280 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01876 Pte-Chr13 31417436 31419522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01876 1 281 Major Intrinsic Protein MIP AT4G35100 91.815 0.0 527
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01876 K09872 - twl:120002354 530.02