Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01874 ATGATATTGAATGGGGTCCTCCTGGTATCTTTGTCCAACCCAGTGGGTCCAATAACCTTTGATAAGTTCCTCAGCCTGATCATCAATTGGCTGCAAATCCAATCAAACTCGCTTAAAAGTGCTTTGTTTGCAACAAAGCCTTCTCATTGTTTCAGGCTTTTGGTGGTCACAAATCCAGCCATAGAAAGCTATCTAGTGAGGGTGGAGAGAGCCCGTCAACATCCTCTGATGTTACCACTACCTCTACACATAACAGTAACCAAATCGAACGATATAGAAAAGATTCATGAATGCACCATCTGCAATAAGTCGTTTCCTACTAGTCAAGCCTTAGGAGGACACAAACGTTGTCACTATAGGGGTGGTAATAGTAGTGGCGATGCTGGTAGCAACAACTTGACCGCCTCTAAAGAGAGAAAGCTCCCTCAATCTCCATCCTCATCAAGGCAGGGCTCCATGGATATCCAACCCTGTGGAGAATTTGATCACTCCTATGTTGGTGGAAAAGTTCAGCTGTAG 519 0.4451 MILNGVLLVSLSNPVGPITFDKFLSLIINWLQIQSNSLKSALFATKPSHCFRLLVVTNPAIESYLVRVERARQHPLMLPLPLHITVTKSNDIEKIHECTICNKSFPTSQALGGHKRCHYRGGNSSGDAGSNNLTASKERKLPQSPSSSRQGSMDIQPCGEFDHSYVGGKVQL* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01874 172 MobiDBLite consensus disorder prediction 124 154 - -
Pte13g01874 172 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 118 IPR013087 -
Pte13g01874 172 MobiDBLite consensus disorder prediction 121 160 - -
Pte13g01874 172 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Pte13g01874 172 SUPERFAMILY beta-beta-alpha zinc fingers 93 120 IPR036236 -
Pte13g01874 172 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 88 138 IPR044653 GO:0003700
Pte13g01874 172 Gene3D Classic Zinc Finger 78 154 - -
Pte13g01874 172 Pfam C2H2-type zinc finger 96 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01874 Pte-Chr13 31405795 31407876 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01874 94 172 C2H2 Transcription Factor Family AT1G27730 44.304 7.14e-12 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte13g01874 zf-C2H2_6 3.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01874 - - pcin:129298535 68.1662