Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01871 ATGGTTTTCGATGAGTACGAGTACTTAGAACAAACCGTAGAGAATTCTGAATCTCGCAAGTCAAAGCAAACGGCCAATGGTGGCAACGGAAAGGTGAAATCTAAAGAGAAAGATCACTCACGAAGTTCTACGCATAAGAGTGACGACAAGGATGATAAATTTGACCAGGATTTGAAGAAGTCGCTGTCTGGGGATGAGTCATACGATGATGATCGGCACAATGAAAAAGGTTTGACTCAACGGCACTCACATTCTAGAGAGAACGAGAGAGGTCGGCACAGAAGTAGTCGTGATCTAAAGGATCGGGAAAGAGATAGAGATGGGGATAGGAAAAGGAGAAATAATGACAGGGACAAAGAGCAGGAGCATGATTGGGGTAGAGACAGGAGAGAACGTGCTAGTGAAAGTGAGAGGGACAGAGAGAGAGATTGCTCAAGGCGAAGCAGGAGTCATTCAGAAAGGCGTAGAATTGATTTTGTCGAAAGACAAAGAGAGAGGAGTCGAGACAGGGAGATCAGTCAGGAAAAGGAGTATGGAGACAGAGAAAAAGACAGGGGATTGCCAGAGCGTGTCAGGGATAGCAGACGGCATAAAGAAAAGAAGGAAGAAGTTGTTGAACCAGAGGTTGATCCTGAACGTGATCAAAGAACTGTGTTTGCTTATCAGCTTCCTTTGAAAGCAGATGAAAGAGATTTGTATGAGTTCTTCTCAAGAGCTGGCAAGGTAAGAGATGTGAAGCTCATCATGGATCGTAATTCAAGGCGTTCCAAGGGTGTTGGGTATATTGAATTTTACGATGTGATGTCAGTGCCGATGGCAATAGCTCTTTCGGGCCAGCCCCTTCTTGGTCAACCTGTGATGGTGAAGCCATCAGAAGCAGAAAAAAATCTAGTTCAGTCAACTACTCTAACTAGTGGAGCATGTTACTCTGGGGTTGCAAGAAGGCTGTATGTTGGAAATCTGCTGTTCAACATGACTGAAGCTGATCTTCGTAAGGTGTTTGAAGCATTTGGTGAGGTGGAGCTAGTGCAGTTGCCTCTTGATGAAACCGGACATTGCAAAGGTTTTGGCTTTGTCCAGTATGTTAGTTTTGAAGATGCAAGAAATGCCCTGACTTTAGATGGGCAACTGGATATTGGTGGTCAGACTATTAAGGTATCAGCTGTTACGGATCAATCTGGAACAACACAAGAATTTGTTAGAAATACTGGTGATCTTGATGAGGAGGATGGTGGTGGCTTGGCCTTGAATGCAAGTTCGCGAGCACTACTTATGCAGAAGTTGGATCGCAGTGGTACTGCATCAAGTGTTACTGGTTCTCTGGGCACACCTTTTGCCCCTGGCATTAATCCTTTGACAACACCATTTTTGGGAGCCGCACCTTTGGCTTCTCCTCCTGCTCCACCTGCCTCTGTTCCTGGTCTAGCTGGACAATCTGGTGCTCCTCTTGCTACTGGGCCCACAGTTACCCTTGATACTATTGGTTTACCAAGTGAATGTTTACTTCTAAAAAATATGTTTGATCCTAAAGAAGAGACGGAGCCTGATTTTCATTTGGACATTAAAGAAGATGTCGTAGATGAATCCTCTAGATTTGGAAATTTGAGACACATATTTGTTGACAAGAACACTGCTGGTCATGTATATTTGCGATTTGATAACACTCAGTCTGCAGTAAGCGCTCAACGAGCTCTTCATGGACGATGGTTTGCTGGAAAAATGATTACTGCAACGTTTATGGTGCCCCAGATCTATGAAGCCAAGTTTCCTGATAGCAAATAG 1782 0.4428 MVFDEYEYLEQTVENSESRKSKQTANGGNGKVKSKEKDHSRSSTHKSDDKDDKFDQDLKKSLSGDESYDDDRHNEKGLTQRHSHSRENERGRHRSSRDLKDRERDRDGDRKRRNNDRDKEQEHDWGRDRRERASESERDRERDCSRRSRSHSERRRIDFVERQRERSRDREISQEKEYGDREKDRGLPERVRDSRRHKEKKEEVVEPEVDPERDQRTVFAYQLPLKADERDLYEFFSRAGKVRDVKLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTLTSGACYSGVARRLYVGNLLFNMTEADLRKVFEAFGEVELVQLPLDETGHCKGFGFVQYVSFEDARNALTLDGQLDIGGQTIKVSAVTDQSGTTQEFVRNTGDLDEEDGGGLALNASSRALLMQKLDRSGTASSVTGSLGTPFAPGINPLTTPFLGAAPLASPPAPPASVPGLAGQSGAPLATGPTVTLDTIGLPSECLLLKNMFDPKEETEPDFHLDIKEDVVDESSRFGNLRHIFVDKNTAGHVYLRFDNTQSAVSAQRALHGRWFAGKMITATFMVPQIYEAKFPDSK* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01871 593 FunFam CC1-like, splicing factor 309 418 - -
Pte13g01871 593 SMART rrm1_1 217 289 IPR000504 GO:0003723
Pte13g01871 593 SMART rrm1_1 315 387 IPR000504 GO:0003723
Pte13g01871 593 SMART rrm1_1 500 578 IPR000504 GO:0003723
Pte13g01871 593 MobiDBLite consensus disorder prediction 1 209 - -
Pte13g01871 593 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 406 517 IPR029123 -
Pte13g01871 593 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 385 IPR000504 GO:0003723
Pte13g01871 593 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 285 IPR000504 GO:0003723
Pte13g01871 593 CDD RRM1_RBM39_like 217 289 - -
Pte13g01871 593 SUPERFAMILY RNA-binding domain, RBD 314 582 IPR035979 GO:0003676
Pte13g01871 593 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 293 IPR000504 GO:0003723
Pte13g01871 593 Gene3D - 209 300 IPR012677 -
Pte13g01871 593 Gene3D - 301 398 IPR012677 -
Pte13g01871 593 SUPERFAMILY RNA-binding domain, RBD 212 295 IPR035979 GO:0003676
Pte13g01871 593 CDD RRM3_RBM39_like 498 580 - -
Pte13g01871 593 Gene3D - 495 593 IPR012677 -
Pte13g01871 593 FunFam RNA-binding protein 39 isoform X1 209 301 - -
Pte13g01871 593 NCBIfam splicing factor, CC1-like family 85 591 IPR006509 GO:0003723|GO:0005634|GO:0006397
Pte13g01871 593 MobiDBLite consensus disorder prediction 31 209 - -
Pte13g01871 593 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 592 IPR006509 GO:0003723|GO:0005634|GO:0006397
Pte13g01871 593 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 391 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01871 Pte-Chr13 31382911 31391657 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01871 217 377 Eukaryotic Initiation Factors Gene Family AT4G34110 28.221 2.54e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01871 K13091 - vvi:100253813 648.277