Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01851 ATGACTCTCTTCCTTTGTTTTGCTTTCTTTCTTGTTATCTCATCAGCAACTGCTTGTGATCGCTGTGTACATACATCCAAGGCAGCCTATTTCTCCAACCCATCTGCACTTTCAGCTGGGGCCTGTGACTATGGCTCCTCAGCTTTAAGCTTCAGTGGTGGATTCATTGCAGCTGCTGTTCCCTCTCTTTACAAAGATGGTGCTGGATGTGGGGCTTGCTTTCAGATAAGATGCAAAAACCAGGCCCTTTGTAGCAGAGAAGGGACAAGGGTAATTTTGACTGATCTCAACCGCAGCAACCAGACGGATTTTGTACTGAGCAACACAGCCTTCATGGCCATGGCTAAAAGGGGTTTGGGTCAACAAGTTTTGAAGCTTGGAATTGTTGATGTGGAGTATAAAAGGGTACCCTGTGTATATAAAAATCAGAACTTGGCTGTAAGAGTCGAAGAAACAAGTAAGAAACCAGATTATCTAGCCATTAAATTTTTGTATCAAGGTGGTCAAACAGAGATAGTTGCTGGTGATGTAGCTCAGGTTGGTTCTTCCAATTGGAGTTTCCTGAGTAGAAATCATGGAGCAGTGTGGGACACAAGCAGAGTCCCAGCAGGAGCATTGCAATTCAGATTGGTTGTGACGGCAGGGTATGATGGCAAGTGGATTTGGGCAAGAAGTGTTCTTCCAGCTGATTGGAAACCTGGCATGGTGTATGACTCAGGAGTTCAAATATCTGACATCGCCAAGGAAGGTTGCTCTCCATGCGATGATGGAAGTTGGTGA 780 0.4513 MTLFLCFAFFLVISSATACDRCVHTSKAAYFSNPSALSAGACDYGSSALSFSGGFIAAAVPSLYKDGAGCGACFQIRCKNQALCSREGTRVILTDLNRSNQTDFVLSNTAFMAMAKRGLGQQVLKLGIVDVEYKRVPCVYKNQNLAVRVEETSKKPDYLAIKFLYQGGQTEIVAGDVAQVGSSNWSFLSRNHGAVWDTSRVPAGALQFRLVVTAGYDGKWIWARSVLPADWKPGMVYDSGVQISDIAKEGCSPCDDGSW* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01851 259 SMART dpbb_1 56 133 IPR007112 -
Pte13g01851 259 Gene3D - 139 243 IPR036749 -
Pte13g01851 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 239 IPR007117 -
Pte13g01851 259 SUPERFAMILY Barwin-like endoglucanases 9 141 IPR036908 -
Pte13g01851 259 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576
Pte13g01851 259 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576
Pte13g01851 259 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Pte13g01851 259 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576
Pte13g01851 259 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576
Pte13g01851 259 FunFam Expansin-like A2 140 244 - -
Pte13g01851 259 Gene3D - 12 138 IPR036908 -
Pte13g01851 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 143 IPR007112 -
Pte13g01851 259 Pfam Lytic transglycolase 57 133 IPR009009 -
Pte13g01851 259 PANTHER EXPANSIN-B3 11 242 - -
Pte13g01851 259 CDD DPBB_EXLA_N 14 140 - -
Pte13g01851 259 SUPERFAMILY PHL pollen allergen 144 239 IPR036749 -
Pte13g01851 259 PRINTS Major pollen allergen Lol pI signature 115 130 IPR005795 GO:0005576|GO:0019953
Pte13g01851 259 PRINTS Major pollen allergen Lol pI signature 215 232 IPR005795 GO:0005576|GO:0019953
Pte13g01851 259 PRINTS Major pollen allergen Lol pI signature 58 69 IPR005795 GO:0005576|GO:0019953
Pte13g01851 259 PRINTS Major pollen allergen Lol pI signature 78 88 IPR005795 GO:0005576|GO:0019953
Pte13g01851 259 PRINTS Major pollen allergen Lol pI signature 148 163 IPR005795 GO:0005576|GO:0019953
Pte13g01851 259 PRINTS Major pollen allergen Lol pI signature 164 179 IPR005795 GO:0005576|GO:0019953
Pte13g01851 259 Pfam Expansin C-terminal domain 146 228 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01851 Pte-Chr13 31200124 31203324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01851 16 259 Expansin Gene Family AT4G38400 67.480 4.55e-112 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01851 - - cave:132192007 441.039