Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01850 ATGGAGGACCTGCAGACCCCGGAGCTGGAGCTGGAGCTTCCGGGGTTCAGGTTTCATCCAACCGACGAAGAATTACTTGAATTTTATCTAAAAAGTGTTGTGTGCGGGAAGAAATTGAGATTCGACGTAATTGATCTTCTCAATATTTACAATCACCATCCTCAGGAATTGCCTGGCTTGGCAAAGATTGGGGAGAGAGAATGGTACTTCTTTGTGCCAAGGGACAGAAAGCATGGCAGTGGGGGAAGACCAAATAGGACAACTGAAAAGGGGTTTTGGAAAGCCACTGGTTCTGATAGGAAAATAGTGAGTTTATCAGAACCAAAACGAGTACTTGGTTTGAGAAAGACCCTTGTGTTTTATCAGGGAAGAGCTCCAAAAGGAACCAAGACTGATTGGGTTATGAATGAATATCGCTTCCCAGACAATAGCCCTTTGCCTAAGCTGGACATTAGTTTATGTTCATCAAACCAATCACGTGAAGATCAAATGGCACAAATGCCAAGTCTAACACAAGATATTGATCTGAAAGAAGAAACAGAAGAAGTGTTTCTGCAAGAAGAGAAGAAGGCTCATGCTGGATTCTGCTCCCATTCATCACCAAGTCTTCAACTGGGGAAGGAGCTTTTACCATTGCCAGATCTGCAAGTGCCTAAATTGGCAATGGATTGGACTCAAGACCCTTTCTGCACTCAGTTAAACAGTCCTTGGCTACAAAATTTGTTGCTTTGTCCCAACGCATTAAATTTCTATTAA 756 0.4286 MEDLQTPELELELPGFRFHPTDEELLEFYLKSVVCGKKLRFDVIDLLNIYNHHPQELPGLAKIGEREWYFFVPRDRKHGSGGRPNRTTEKGFWKATGSDRKIVSLSEPKRVLGLRKTLVFYQGRAPKGTKTDWVMNEYRFPDNSPLPKLDISLCSSNQSREDQMAQMPSLTQDIDLKEETEEVFLQEEKKAHAGFCSHSSPSLQLGKELLPLPDLQVPKLAMDWTQDPFCTQLNSPWLQNLLLCPNALNFY* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01850 251 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 186 - -
Pte13g01850 251 Pfam No apical meristem (NAM) protein 14 139 IPR003441 GO:0003677|GO:0006355
Pte13g01850 251 ProSiteProfiles NAC domain profile. 12 159 IPR003441 GO:0003677|GO:0006355
Pte13g01850 251 SUPERFAMILY NAC domain 13 149 IPR036093 GO:0003677|GO:0006355
Pte13g01850 251 Gene3D NAC domain 21 178 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01850 Pte-Chr13 31193234 31194576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01850 10 241 NAC Transcription Factor Family AT2G17040 50.735 8.34e-83 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte13g01850 NAM 2.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01850 - - qsa:O6P43_011405 325.865