Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01830 ATGGCGTCGTCGTCGACTTCTAGCAGCGGCCTGACATTCAAGCTGCATCCATTGGTAATAGTGAACATATCGGATCACTACACTAGGGTTAAGTCTCAGATGAACCCACCTCTGCCTGTGGCTATGTCTGTGTCTCCTAAGGGCGATAGCAACACTTCCTGCGCTGCAACTACTGCTTCTACCTCAAATGGTGTCGATAGTAAAGCTTCCGTTGCTCCTAGGGTGTATGGTTGCGTGATCGGTGTGCAGAGGGGACGTACCGTCGAGATTTTTAACAGCTTCGAGCTTCTATATGATCCTTCCACCCATTCTCTGGACCGCGCTTTCCTGGAGAAGAAGCAAGAGCTCTATAAGAAGGTATTTCCTAACTTTTACATACTCGGATGGTATTCCACCGGGAGTGATGCCGAAGAATCCGATATGCACATTCACAAGGCTTTGATGGATATCAATGAGAGTCCTGTTTATGTCCTTCTCAATCCTTCAATCAATCATGCGCAAAAGGATCTGCCTGTTACCATTTACGAAAGTGAGCTTCATGTTATTGATGGGAATCCTCAACTTATCTTTGTTCGAGCTAGCTATACAATTGAGACGGTCGAAGCTGAACGGATATCTGTTGATCATGTTGCACATCTTAAACCGTCTGATGGAGGCTCAGCTGCTACTCAACTGGCTGCTCACCTAACTGGCATACACAGCGCCATCAAGATGCTGAATAGTCGTATCAGGGTGTTGCATCACTACCTTCTTGCAATGCACAAAGGTGATATACCTTGTGAGAATTCATTGCTCAGACAAGTATCTAGTCTGCTGCGGAGATTGCCCGCGATTGAATCTGGGAAGTTTCAAGATGATTTCTTGATGGAGTACAATGACACTTTACTGATTACTTATCTTGCAATGCTAACCAATTGTTCGAGCACCATGAATGAACTGATCGATAAGTTCAACGCTGCATATGATCGGCACAGTAGAAGAGGTGGACGAATTGCTTTTATGTAA 1005 0.4517 MASSSTSSSGLTFKLHPLVIVNISDHYTRVKSQMNPPLPVAMSVSPKGDSNTSCAATTASTSNGVDSKASVAPRVYGCVIGVQRGRTVEIFNSFELLYDPSTHSLDRAFLEKKQELYKKVFPNFYILGWYSTGSDAEESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIDGNPQLIFVRASYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLLAMHKGDIPCENSLLRQVSSLLRRLPAIESGKFQDDFLMEYNDTLLITYLAMLTNCSSTMNELIDKFNAAYDRHSRRGGRIAFM* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01830 334 Gene3D Cytidine Deaminase, domain 2 1 215 - -
Pte13g01830 334 ProSiteProfiles MPN domain profile. 50 181 IPR037518 -
Pte13g01830 334 Pfam Maintenance of mitochondrial structure and function 201 315 IPR024969 -
Pte13g01830 334 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 2 325 - -
Pte13g01830 334 CDD MPN_CSN6 11 330 IPR033859 GO:0000338|GO:0008180
Pte13g01830 334 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 9 153 IPR000555 GO:0005515|GO:0008233|GO:0008237
Pte13g01830 334 SMART pad1_6 12 180 IPR000555 GO:0005515|GO:0008233|GO:0008237
Pte13g01830 334 FunFam COP9 signalosome subunit 6 1 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01830 Pte-Chr13 31004610 31009515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01830 2 285 Eukaryotic Initiation Factors Gene Family AT2G39990 21.453 3.49e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01830 K12179 - mof:131165274 560.066