Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01828 ATGGGTTCTTGCCATTCATCATTCAGAGGACAGACAAGGAGAAATACCACTCAACTAGCTGCAGCAGACGCTGCTGGTTCAGCTGATGCTTTTAAGGTAAAGGGAAAGCTTCATGGTTCGGGTAGGTGGAAACGAAAATCTGTTGGTGGTGACGAAGATGCTTCTGACCTTCAACTGATTCCAGGGAGGCTGTTCATGAATGGCGCAACCAAAACTGCTTGCTTGTACACCCAGCAGGGCAAGAAAGGCACCAATCAAGACGCCATGATTGTTTGGGAGGATTTTGGTTCAAAAGGCAAGACAATCTTTTGTGGTGTTTTTGATGGACATGGTCCTTTTGGTCACCTGGTAGCAAGGAAAGTCCGGGATTCTCTTCCACGCATACTGTGGACCCAGTGGGAAGCTTGCTTTATCGGTGACAATAGCAACAGCCAGAAACTTGAACCTAATAACAACACTACCATAGACTCAGAAGAAGTGCCTTCGTTGAGCTTGGCTGAGGACTTGCATGATTCCTCGGAGGGAAAGGACATTGAGAAATTCCCTCAAACTTTTCTTCCACTTAAAAGGTCCATCTTGTCTGCTTTCAAGCTGATGGATAAGGAGCTTCAGTTGCACCCTGGAATTGATTGCTTTTGCAGTGGAACAACTGCTGTTACTTTGCTTAAAGAGGGAAACAGTCTTGTAATTGGAAATCTGGGAGATTCAAGAGCAATACTTGCATCCAGAGATAAAGACAACTCCCTAATTGCTGTACAGCTGACAACGGACTTGAAGCCTGATCTTCCAGGTGAGGCTGCAAGAATCCAGCAATGTAAAGGGAGGGTTTTTGCATTGCAAGATGAACCTGAGGTTGCACGTTTATGGTTGCCCAATACTGACTCTCCTGGTTTAGCAATGGCTAGAGCTTTTGGAGACTTTTGTCTAAAAGATTTTGGTTTAATTTCCACTCCTGATGTCTTTTACCATGAGCTGGATGAGCGAGATGAATTCGTCATTCTTGCTACTGATGGGGTTTGGGATGTTCTCTCAAACAAGGAAGCAGTGGACATTGTCGCATCAGCACCTGGTCGTCCAATGGCTGCCAGAGCTCTTGTAGATAGTGCTGTTCGAGCATGGAGGCTTAAGTATCCCACCTCTAAGATTGATGATTGTGCTGTTGTGTGTCTCTTCCTAGAACACACAGTAACTGTTAGTGAAGCTGAAGCAAATAATGATGTTTTGAACACTCCCACTCCCAAACCTGGTTCACAAGAAACCACGGCTGTTACGGAGGAAAAAACCAGTTGCAATGAAGAATTAAGTGTTTCGCATGATACTCAACCTGAGAAAACAGATACCCTGCTAAGTTCAGATGAGATTGTACCTGTGTCTGAGTCCACTGGAGCCGGCTCTAAGCGGAGCCTTGCTGAGTGCATTTCAATGGCAGATGATGAAGAATGGTCAGCCCTAAAAGGTATCAGTCGGGTTAATAGTCTAGTAAGCCTACCAAGAGTGTTCTCATTCTCTGGGGAGAAAAAAACAGGTACTTGGAGAAAGTGGCTATGA 1548 0.4516 MGSCHSSFRGQTRRNTTQLAAADAAGSADAFKVKGKLHGSGRWKRKSVGGDEDASDLQLIPGRLFMNGATKTACLYTQQGKKGTNQDAMIVWEDFGSKGKTIFCGVFDGHGPFGHLVARKVRDSLPRILWTQWEACFIGDNSNSQKLEPNNNTTIDSEEVPSLSLAEDLHDSSEGKDIEKFPQTFLPLKRSILSAFKLMDKELQLHPGIDCFCSGTTAVTLLKEGNSLVIGNLGDSRAILASRDKDNSLIAVQLTTDLKPDLPGEAARIQQCKGRVFALQDEPEVARLWLPNTDSPGLAMARAFGDFCLKDFGLISTPDVFYHELDERDEFVILATDGVWDVLSNKEAVDIVASAPGRPMAARALVDSAVRAWRLKYPTSKIDDCAVVCLFLEHTVTVSEAEANNDVLNTPTPKPGSQETTAVTEEKTSCNEELSVSHDTQPEKTDTLLSSDEIVPVSESTGAGSKRSLAECISMADDEEWSALKGISRVNSLVSLPRVFSFSGEKKTGTWRKWL* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01828 515 ProSiteProfiles PPM-type phosphatase domain profile. 72 392 IPR001932 -
Pte13g01828 515 SMART PP2C_4 63 390 IPR001932 -
Pte13g01828 515 PANTHER PROTEIN PHOSPHATASE 72 390 IPR015655 GO:0004722|GO:0006470
Pte13g01828 515 MobiDBLite consensus disorder prediction 403 448 - -
Pte13g01828 515 Gene3D - 66 395 IPR036457 -
Pte13g01828 515 MobiDBLite consensus disorder prediction 403 430 - -
Pte13g01828 515 SUPERFAMILY PP2C-like 66 393 IPR036457 -
Pte13g01828 515 CDD PP2Cc 73 392 IPR001932 -
Pte13g01828 515 Pfam Protein phosphatase 2C 188 370 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01828 Pte-Chr13 30978165 30982612 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01828 1 516 PP2C-type Phosphatase Gene Family AT1G16220 55.048 0.0 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01828 - - cave:132174867 624.394