Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01819 ATGGATCCCCCTGGCTCTGGTCGCTATGGTCTTCAGCAAGGCTGGGACAATAACAGCGCTCTTGAGGGTTATGCTGCGTCCCATGACCCACATTTTCGAGCTGGTGGTTCATATGATGAAAGGAGGTATAAAGATGAAAAGTTCCCAAGAGGGCATTACTACCAAAGAGATACCTTCCACCATGACATTATGGATAGGGATGGCCATCAATCTGCAGGGCCTCCTGCATTAGGTCACTGGAGCCAATCGAAACGGAGAGATTATAAAGACAATTATACATTGAGCAGGGAATATAGGCATCCTGAGAAGCCTTGCCACAGTTCTTTCCACTATTCAGATGTTCACAAAGATCGTGAAAGGGTTAGATATTCAGATTTTGGTGAGTTTCAAGATGGATATGGTGTCCCTGAAAATCATGGAGATCGAGGCTATGACCAGCCCAGTCATTTGGAGGGGCATGAGCATAATGATTATGCTTATGATGACTATGAGTATAGGTCCCACAGTTCACGTCATCGTAGGGATGATAGCCTTGATAGTGATTATGACCATCACCGGCCTAGTTATGATTCTGATTATGAAAGGAGCAGTAGAAGAGATGGCAATTGGAGGCAACGGGACTCCCGTGACCGAGAACATGATCTTAGATGTTCCAGTCGGGAAATAGATTCAAGTGTACATAGGAGGCATGAAAGATCTCGCTCTCGCTCTCATTCTCACTCTCATTCCCATGGATATGACGATCGCCTTGGATCAAGGTCTCCACAAGCTCGAAGAGATCGGGAGAAGCGTCAACGTGATTATTATTCTGTGGCACCATCAGCTACTGTTGTTGTGAAAGGCCTTCCGCAGAAAACAACTGAAGAGGATCTATATCAAATCCTTGCTGAGTGGGGCCCCCTCCGGCATGTCCGAGTAATAAGAGAGAGAACTTCTGGCATTTCTCGAGGATTTGCGTTTATTGATTTTCCTTCTCTGGAAGCAGCATTTGCAATGATGGGCAAGCTTGGAGATGATGGTCTTGTTGTGGATGGCAGAAAGCTATGCTTTGAGTATAGTAGCAAGCCAACTGGGGGTCCTGGCGGACCCTTTGCTCAAGATAGTGGCACAAAGTCAGGTCATAATCATAAAATGATCACCATGCCGTCTGATTGGAGGTGTACCATTTGTGACTATATCAACTTTGCAAGGCGGACATCCTGTTATCAGTGCAATGAACCAAGGACAGATGATGCTCCCCCTGCTGATATCTCAACATCCTACTCAGCATCCTTGGGAAAGAAAGGATCGGAAGCTGGTCCTACTCATGTACTGGTTGTTCGTGGGTTGGATGATAATGCTGATGAAGAAATGCTTCGTTATGAGTTCTCGAAACATGTTCCAATCAAGGATCTGCGTCTTGTCAGAGACAAGTTTACACATGTCTCAAGGGGATTTGCATTTGTCCACTTTTACTCGGTAGAGGATGCCACTAAAGCTCTTGAAGCGACCAATGGAACAACCCTTGAAAAGAATGGCCAGATCTTAAGAGTAGCATATGCAAAAAGTATGCTCGGGCCCGGTGGTACATCAGCTTCCCAGTCCAACAGTCTTGCTGCGGCTGCAATTGAGGCTGCTGCATTTGCTCAGCAGTACGATGCTCTTGGATGGGCACCAAAGGAATATAATCCAGATGATAAGGCACAAGTCGGTCAACCACAAAGCAATACAGGGGATGCTTCTCAGAATGATGGCATGGCTCCACAGTCAGGCTTTGTCTGGGATGAGGCATCTGGTTATTACTATGATGCTGCTTCTGGATTCTACTATGATGGAAATACAGGTCTCTATTATGATGGTAATAATGGTACATGGTATTCATATGACCGTAAAACTCAGCAGTATATACCTTATACTGATCAAAATAACAACAAAACACCTAGCAACCAGTCTGAACTCTCTAAGGCTTCTGATAATTCTAATGGCAAAAAGGCAGTCATATCTGCCCCCGCTACTACCATAGCATGTGAGAAGTCTGCTACTTTACCAGATGCAGTTCGGGCTGCAGCAGCTGCAGCAATAGCGGCAGAGAAGAAAGAAAAAGAGAAATTGAGAGAAATTAGACTGGCTTCAAGGAGCAGTATTCTAGCCAGCAAGAAGAAAATGAACAATGTATTGACAATGTGGAAGCAGAGGAGTCATGAAGGGCAAGCTACACGTGTGGCTCTCGATGACAACCAACCATCTGCATCTGCTGATGCTAGTCCTTTCACAACAGGCCACTCTGCAAAAATTAAATGTAGAAGTGAAGCAATGACTGTGAAGGAGAATAATGCAGCAGATTCAGGATTTGCCTCGTCTGTTTCTAGTGCACAGAATTCTTTCGACTCCGAGGTCAAGCGGCAACCAGTGAGTAATAGTGTTGGGGGTACTCTAATGGGAGTTATAAGAGGTTCTGGAAGAGGTGTAATCAAATCAGAGACTTCTAATTCTGGGTCCACAAATACTGCTACATACACTTCAGATTCTTTAAGGAATTCAGCTGCGCCAACAACTTCTACACCTTTCAGGACAGATGTGTCTGCTTTGGGCTCACACGCACCATCTATGTCTAATGGAAGTGGGAAGAGGAGGTTCTCTGAAACACCTGTAGGTTCCGCATCTACTACTAGGGAACAGCCTCAGACTTCTTACCGGGACCGAGCTGCTGAGAGGAGGAGCTTGTATGGATCATCATCATCATCTGTTGGAAATGACTCGTCAGATATTGAATTTCAGGATTCAAGTATGGCTAATTTCTCATTTTGTTAG 2790 0.4513 MDPPGSGRYGLQQGWDNNSALEGYAASHDPHFRAGGSYDERRYKDEKFPRGHYYQRDTFHHDIMDRDGHQSAGPPALGHWSQSKRRDYKDNYTLSREYRHPEKPCHSSFHYSDVHKDRERVRYSDFGEFQDGYGVPENHGDRGYDQPSHLEGHEHNDYAYDDYEYRSHSSRHRRDDSLDSDYDHHRPSYDSDYERSSRRDGNWRQRDSRDREHDLRCSSREIDSSVHRRHERSRSRSHSHSHSHGYDDRLGSRSPQARRDREKRQRDYYSVAPSATVVVKGLPQKTTEEDLYQILAEWGPLRHVRVIRERTSGISRGFAFIDFPSLEAAFAMMGKLGDDGLVVDGRKLCFEYSSKPTGGPGGPFAQDSGTKSGHNHKMITMPSDWRCTICDYINFARRTSCYQCNEPRTDDAPPADISTSYSASLGKKGSEAGPTHVLVVRGLDDNADEEMLRYEFSKHVPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTTLEKNGQILRVAYAKSMLGPGGTSASQSNSLAAAAIEAAAFAQQYDALGWAPKEYNPDDKAQVGQPQSNTGDASQNDGMAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGTWYSYDRKTQQYIPYTDQNNNKTPSNQSELSKASDNSNGKKAVISAPATTIACEKSATLPDAVRAAAAAAIAAEKKEKEKLREIRLASRSSILASKKKMNNVLTMWKQRSHEGQATRVALDDNQPSASADASPFTTGHSAKIKCRSEAMTVKENNAADSGFASSVSSAQNSFDSEVKRQPVSNSVGGTLMGVIRGSGRGVIKSETSNSGSTNTATYTSDSLRNSAAPTTSTPFRTDVSALGSHAPSMSNGSGKRRFSETPVGSASTTREQPQTSYRDRAAERRSLYGSSSSSVGNDSSDIEFQDSSMANFSFC* 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01819 929 ProSiteProfiles Zinc finger RanBP2 type profile. 381 410 IPR001876 -
Pte13g01819 929 MobiDBLite consensus disorder prediction 171 230 - -
Pte13g01819 929 MobiDBLite consensus disorder prediction 787 917 - -
Pte13g01819 929 MobiDBLite consensus disorder prediction 631 657 - -
Pte13g01819 929 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 436 516 IPR000504 GO:0003723
Pte13g01819 929 MobiDBLite consensus disorder prediction 171 268 - -
Pte13g01819 929 SMART zf_4 383 407 IPR001876 -
Pte13g01819 929 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 277 335 IPR000504 GO:0003723
Pte13g01819 929 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 438 504 IPR000504 GO:0003723
Pte13g01819 929 CDD OCRE_SUA_like 580 631 IPR035623 -
Pte13g01819 929 CDD RRM1_RRM2_RBM5_like 434 514 - -
Pte13g01819 929 Pfam OCRE domain 582 631 IPR041591 -
Pte13g01819 929 Gene3D - 151 358 IPR012677 -
Pte13g01819 929 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 275 355 IPR000504 GO:0003723
Pte13g01819 929 SMART rrm1_1 437 512 IPR000504 GO:0003723
Pte13g01819 929 SMART rrm1_1 276 351 IPR000504 GO:0003723
Pte13g01819 929 SUPERFAMILY RNA-binding domain, RBD 433 521 IPR035979 GO:0003676
Pte13g01819 929 MobiDBLite consensus disorder prediction 787 802 - -
Pte13g01819 929 SUPERFAMILY Ran binding protein zinc finger-like 375 411 IPR036443 -
Pte13g01819 929 Gene3D - 417 541 IPR012677 -
Pte13g01819 929 MobiDBLite consensus disorder prediction 553 582 - -
Pte13g01819 929 Gene3D - 375 411 - -
Pte13g01819 929 ProSitePatterns Zinc finger RanBP2-type signature. 385 404 IPR001876 -
Pte13g01819 929 PANTHER RNA-BINDING PROTEIN 173 903 - -
Pte13g01819 929 MobiDBLite consensus disorder prediction 561 581 - -
Pte13g01819 929 SUPERFAMILY RNA-binding domain, RBD 227 352 IPR035979 GO:0003676
Pte13g01819 929 MobiDBLite consensus disorder prediction 240 268 - -
Pte13g01819 929 MobiDBLite consensus disorder prediction 64 86 - -
Pte13g01819 929 MobiDBLite consensus disorder prediction 406 428 - -
Pte13g01819 929 MobiDBLite consensus disorder prediction 128 154 - -
Pte13g01819 929 MobiDBLite consensus disorder prediction 900 917 - -
Pte13g01819 929 MobiDBLite consensus disorder prediction 20 39 - -
Pte13g01819 929 MobiDBLite consensus disorder prediction 816 889 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01819 Pte-Chr13 30871843 30885503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01819 274 500 Eukaryotic Initiation Factors Gene Family AT2G36660 24.803 9.82e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01819 K13094 - gmx:100787998 1150.96