Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01813 ATGGGTCGCATTCCATGCTGCGAGAAAGACAACGTCAAGAGGGGTCAATGGACACCAGAAGAAGACAATAAGCTTTCCTCCTACATTGCTCGACATGGGACTCGCAATTGGCGGCTAATCCCCAAAAATGCTGGTTTGCGATATTCTTCCATTCTGTCACCTGTTTTATGTCCACAACTAAAAGCAACAGACAAGCCTGACTTTAGTTTTCTATTGGAACTAGGTCTTCAGAGATGTGGCAAGAGCTGCAGGCTAAGATGGACTAATTATCTTCGACCCGATCTGAAACATGGCGAGTTCTCTGACGCCGAAGAACAAACCATTATGAAACTTCACTCTGTTGTTGGCAACCGATGGTCGCTGATAGCAGCTCAGCTACCTGGTCGCACTGACAATGACGTCAAAAATCACTGGAATACCAAACTGAAGAAGAGACTTTCAGGGATGGGCATTGACCCTGTTACCCACAAGCCATTCTCCCACCTTATGGCTGAAATTGCTACAACACTGGCACCCCCACAGGTGGCTCACCTTGCAGAAGCAGCACTCGGCTGTTTCAAAGATGAGATGCTTCATCTCCTTACCAAGAAGCGCATTGACTTCCAGGTCCATCAATCTCAAGCAGCACCAGGCAACTCAATCCCCGCTCACACTAGTGGTCAACAGCATGAAAAAGATGGCACCATTGAGAAGATCAGATTGGGTCTATCAAAAGCTATACGAGAACCTGACCTAATACCCCCAAAACATTGGGATAACTCCGCACAAACCAGCACTAATTTTGCAGAGACATGCAATATTTTCCCTGCTATCTCTGGTTATCAGTTTGGCTCAGTTTTTGACAATGAAGGAGTAGGATCCCCGTGGAGTCAGAGCATGTGTAATGAAAGCACATGCACCGCAGGGGAGCAACAGGTTCAAATGCACCAAAAACTCGATGAAGAAATTGCAGATGAATCTGAAGGCATAAAGGAAATTAGAAACGGGTCCAACATGTTCAATACAGACTGCGTCTTGTGGGATTTACCATCTGACGTTCTAATGAACCCATAG 1053 0.4606 MGRIPCCEKDNVKRGQWTPEEDNKLSSYIARHGTRNWRLIPKNAGLRYSSILSPVLCPQLKATDKPDFSFLLELGLQRCGKSCRLRWTNYLRPDLKHGEFSDAEEQTIMKLHSVVGNRWSLIAAQLPGRTDNDVKNHWNTKLKKRLSGMGIDPVTHKPFSHLMAEIATTLAPPQVAHLAEAALGCFKDEMLHLLTKKRIDFQVHQSQAAPGNSIPAHTSGQQHEKDGTIEKIRLGLSKAIREPDLIPPKHWDNSAQTSTNFAETCNIFPAISGYQFGSVFDNEGVGSPWSQSMCNESTCTAGEQQVQMHQKLDEEIADESEGIKEIRNGSNMFNTDCVLWDLPSDVLMNP* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01813 350 ProSiteProfiles Myb-like domain profile. 9 91 IPR001005 -
Pte13g01813 350 SMART sant 96 144 IPR001005 -
Pte13g01813 350 SMART sant 13 93 IPR001005 -
Pte13g01813 350 MobiDBLite consensus disorder prediction 207 222 - -
Pte13g01813 350 Gene3D - 98 158 - -
Pte13g01813 350 CDD SANT 99 142 IPR001005 -
Pte13g01813 350 Gene3D - 6 97 - -
Pte13g01813 350 MobiDBLite consensus disorder prediction 207 227 - -
Pte13g01813 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 146 IPR017930 -
Pte13g01813 350 CDD SANT 17 91 IPR001005 -
Pte13g01813 350 ProSiteProfiles Myb-like domain profile. 92 142 IPR001005 -
Pte13g01813 350 Pfam Myb-like DNA-binding domain 14 46 IPR001005 -
Pte13g01813 350 Pfam Myb-like DNA-binding domain 98 140 IPR001005 -
Pte13g01813 350 PANTHER F14D16.11-RELATED 1 47 - -
Pte13g01813 350 FunFam transcription factor MYB80 99 159 - -
Pte13g01813 350 SUPERFAMILY Homeodomain-like 11 138 IPR009057 -
Pte13g01813 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 56 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01813 Pte-Chr13 30816446 30817679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01813 1 201 MYB Transcription Factor Family AT5G56110 76.617 1.05e-109 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte13g01813 Myb_DNA-binding 2.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01813 K09422 - qsu:111994049 519.235