Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01797 ATGGGACGTGGGAAGATAACCATTGCACGCATTGAGAACAAAACCACAAGACAGGTCACTTTTGCAAAACGAAGGAATGGATTGTTCAAGAAAACTAACGAGCTTTCAGTTCTCTGTGATGCTGAGATTGGCCTCGTCATATTCTCAAGCAATGGCAAGCTCTTCCAGTACCACAGTGAGTCAACAAGCATGGAGAACATCATAAAAAGGTACCAGATGGCAACAGGGACTCATATTTATGACTACAATGAGCAGGAACAGATTCATAACGAGTCCAAAAGAATGAGAGCTCAATGCCATCAGCTTCAGCTATCCTTGAGCCGTTACACTGGTGAGGACCTAAGTTCTGTAGAAATTGAAGATCTCAATCTGCTTGAACAGCAGCTGCAGAATTCTGTAGAGAAAGTCCGAGCTAGGAAGTATGAGCTTTTGCAGCAGCAGATAGACAATCTCCGGAGGAAGCTCAAGAATGGTCATGATCAGAGGGATGGAGCAACTGTGCAAAAGGCTGAGGACCAAAGAATATTTCTCCAGTTCCCATTCTCTGGTGAAGAGCAACCAGAAAATGTAATCCATATGGCGAATAACCTAATCCCACAGTTTCAACCATATCGTCTGCAGCCAACTCAGCCCAACCTTCAAGACTTCAACTTCTTCCGCTCCAGTTATGGTACATATATTATATATGATTCATCACTTCAACTTAATCATTTGACATCTTGA 723 0.4288 MGRGKITIARIENKTTRQVTFAKRRNGLFKKTNELSVLCDAEIGLVIFSSNGKLFQYHSESTSMENIIKRYQMATGTHIYDYNEQEQIHNESKRMRAQCHQLQLSLSRYTGEDLSSVEIEDLNLLEQQLQNSVEKVRARKYELLQQQIDNLRRKLKNGHDQRDGATVQKAEDQRIFLQFPFSGEEQPENVIHMANNLIPQFQPYRLQPTQPNLQDFNFFRSSYGTYIIYDSSLQLNHLTS* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01797 240 ProSiteProfiles K-box domain profile. 85 189 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte13g01797 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte13g01797 240 Coils Coil 141 161 - -
Pte13g01797 240 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Pte13g01797 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte13g01797 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 171 - -
Pte13g01797 240 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Pte13g01797 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte13g01797 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte13g01797 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte13g01797 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte13g01797 240 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte13g01797 240 Coils Coil 119 139 - -
Pte13g01797 240 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Pte13g01797 240 Pfam K-box region 83 162 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01797 Pte-Chr13 30640399 30642471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01797 1 215 MADS-box Gene Family AT5G23260 42.683 1.10e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte13g01797 K-box 2.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01797 - - vvi:100249015 264.233