Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01781 ATGGAGGATAATGTAGTTCTAGGAGGCAGAACAACCTTGTATATAGTTAAGGAAGAAGATGAAGATGAGTTTTGTAGTTGCTGTGGGGATGAAGAAGTGTTGAAGGACACTGAGGAGTTGGTGAAGGTGGACTTGAAGGAAGAGCTTGATGAATATTCAGTCAGGTTGTACTTCAAGGGTTTGTCAATAATTGGCTCCGACGACGATGATGCGGGGTTTTCTGGAATTGGAGTAGTCATGGAAAGGTCAGCTAGTCTTCCCGCTATTCGGGTTCAAAAGAGGCTTGATTTTTATGTCGATGAGACGGTGGCTAACTACTTGGCTTTAATGGATGGTCTCTTAGTAGCTGGGCAGAACAATGTTCGTCGGGTCTTTGCTTTTACGGATTCTCAGTTGTTGAATGATCAGATAAACAGTGAGGAAAAACTTGAGATGCCACTTGTTGATGCTCTGAGAGAGAGAATCACTGAACATGCCAATAAGTTTGAAACATTTGCTATCAAACTTGCACCAATTGTTGATCTGGCGCAGCCCTTGCAATTAGCACAAGTAGCAATTGGAGTGGTCTCATTTCCGGTGCCTGGGAAAAAATTAGTTGAAAACTGTTCTATTTGCTGTGAGGACAAATCTTCAGCAATGATGGTTAACCTGAAATGTCACCACAAGTTCTGTTCACATTGTATGAAAACCTATGTGAACGGGAAAATACATTATTCTCAAGTTCCCATCCGATGTCCTGAACTGAGGTGCAAATATTACATTTCTTCCTCTGAGTGCAGATCTTTTCTCCCATTCACATCTTTTGAATCTCTAGAGAAAGCCCATGCTGAAGCAAATGTTCATTCTGACAAAATATATTGTCCCTTTCCAAGTTGTTCTGTTGAGCTCAATCCTCGTGAATGCTTATGTGCAAGGGCAAGTTCTTCAAGCCAGTCAAAGAATACATGCATAGAGTGTCCAGTCTGCCTGAGGTTTATTTGTGTTGACTGTGGAGTGCCATGGCATTCTTCAATGAGCTGTGAAGAGTATCAGAATCTTCCATTGGATGAGAGAGATGCTGCTGCTATTAACTTGCATTGTCTTGATCAAAATAAAAGATGGATGTGCTGTCAGCATTGTCAGCAGATGATTCAGTGTACACGGGGTTGCTACCACATGACTTGCAGGTGTGGTCATGAATTCTGCTACTCTTGTGGTGTGGAATACAGACATGGGCAGCAGGCCTGTCAATGTATTTATTGGGAGGAAGAGTGTTCTGATTCAGGGACCGCATCCATTCAGGAAACGGAACCATGGGCATGGGAGACTTTCAACTCTCTCCCTATGGTCATGGATGCATACTCAGAACAAGAACGTTACCAGCTGGCCCTAATCCAAAGATTCCTAGCTGGAGGTTTCAGTCTGAGTGACCATAACCAGTGCCAATCTCCTCCCCGCTGTACAGATTCTTATGTAGATGCAATGAAGGATCTTCATCAGCTTCCGTGGCTGGAGAGATTTGTTTCAGTGATAAGTGACAGCTATTATGAGGACTATATGGCATGA 1545 0.4311 MEDNVVLGGRTTLYIVKEEDEDEFCSCCGDEEVLKDTEELVKVDLKEELDEYSVRLYFKGLSIIGSDDDDAGFSGIGVVMERSASLPAIRVQKRLDFYVDETVANYLALMDGLLVAGQNNVRRVFAFTDSQLLNDQINSEEKLEMPLVDALRERITEHANKFETFAIKLAPIVDLAQPLQLAQVAIGVVSFPVPGKKLVENCSICCEDKSSAMMVNLKCHHKFCSHCMKTYVNGKIHYSQVPIRCPELRCKYYISSSECRSFLPFTSFESLEKAHAEANVHSDKIYCPFPSCSVELNPRECLCARASSSSQSKNTCIECPVCLRFICVDCGVPWHSSMSCEEYQNLPLDERDAAAINLHCLDQNKRWMCCQHCQQMIQCTRGCYHMTCRCGHEFCYSCGVEYRHGQQACQCIYWEEECSDSGTASIQETEPWAWETFNSLPMVMDAYSEQERYQLALIQRFLAGGFSLSDHNQCQSPPRCTDSYVDAMKDLHQLPWLERFVSVISDSYYEDYMA* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01781 514 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 142 419 IPR031127 GO:0004842|GO:0016567
Pte13g01781 514 ProSiteProfiles TRIAD supradomain profile. 198 415 IPR044066 -
Pte13g01781 514 CDD BRcat_RBR_unk 282 343 - -
Pte13g01781 514 Gene3D - 57 179 IPR036397 GO:0003676
Pte13g01781 514 FunFam RBR-type E3 ubiquitin transferase 54 188 - -
Pte13g01781 514 Gene3D - 338 463 - -
Pte13g01781 514 SUPERFAMILY RING/U-box 200 275 - -
Pte13g01781 514 ProSitePatterns Zinc finger RING-type signature. 219 228 IPR017907 -
Pte13g01781 514 SMART ring_2 202 248 IPR001841 -
Pte13g01781 514 CDD Rcat_RBR_unk 366 402 - -
Pte13g01781 514 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 283 IPR013083 -
Pte13g01781 514 FunFam RBR-type E3 ubiquitin transferase 197 282 - -
Pte13g01781 514 SUPERFAMILY RING/U-box 358 416 - -
Pte13g01781 514 SMART ibrneu5 350 409 IPR002867 GO:0008270
Pte13g01781 514 SMART ibrneu5 269 340 IPR002867 GO:0008270
Pte13g01781 514 Pfam Reverse transcriptase-like 70 170 IPR002156 GO:0003676|GO:0004523
Pte13g01781 514 ProSiteProfiles Zinc finger RING-type profile. 202 249 IPR001841 -
Pte13g01781 514 SUPERFAMILY Ribonuclease H-like 65 163 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01781 Pte-Chr13 30481111 30485414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01781 52 400 C3H Transcription Factor Family AT2G19610 26.389 4.36e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01781 - - cave:132171155 772.311