Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01774 ATGGATCTTTCAGCTGAACCATCATCATCTTTGAGCTTCACATCATCTTCCCGCTTGTCAAATGGTTCAGTTTGCCACAGCATGTCCTCTTTCTCTGTTCGTGATCTTGGACACAACCTCGATGTGGTCAGTTTAAGTAAGCTTAGTTCTAATTTAGGGCAGCTCTTGGTTGACTCCAGCTTTGATTTTAGTGATGCCAATATAGTCGTTGAAGGAACCCCAGTCGGTGTACATCGTTGTATTTTGGCTGCTAGGAGTAATTTCTTTTATGAGTTGTTTAGAAAAGAGAAAGGTACTGAGAAAGATGGCAAGCTGAAGTATTACATGAGTGATTTATTACCTTATGGACGAGTTGGATATGAAGCTTTTCTTCTTTTTTTGGGCTATGTATATACTGGAAAGCTGAATCCATCCCCAATGGAGGTGTCAACTTGCGTCGACAACACATGTTGTCATGATGCATGTAGGCCTGCCATAACTTTTGCGGTGGAGTTGATGTATGCGTCTTCTATATTTCAAATTCCAGAGTTGGTTTCACTTTTTCAGCGGCGTCTTCTTAACTTTGTTGGAAAGGCTGCTGTGGAAGATGTCATCCCAATTCTCATGGTTGCTTTTCATTGTCAATTGAGTCTACTTGTCACTCAATGCTTGGAGAGAATAGCCCGATCAGACCTTGATAGCATCACAATAGAGAAGGAGCTTCCTCATGAACTATCAGAAAGTTTTAAGTTGCTGTGTCACAATTCTCACCCTGATATGGAGCAAAATGCTACTATAGATCCTTTGCATCAAAAGAGAATCAGTAGGATACATAAGGCATTAGACTCAGATGATGTAGAACTTGTTAAACTTCTTTTGACTGAGTCAGATGTGACGTTGGATCAAGCCAATGCTCTTCATTATGCAGCAGCCTACTGTGATCCTAAGGTTGTTTCTGAGGTGCTTAGTTTGGGTCTTGCAGATGTCAATCTTCGAAATTCTCGAGGCTACACTGTCCTCCACATTGCAGCTATGCGCAAGGAGCCATCAGTAATAGTATCTCTTCTTACTAAAGGCGCTTGTGCGTCGGACCTGACTTTTGATGGGCAGAGTGCTGTTAGTATTTGCAAGCGATTAACAAGGCCAAAAGATTATCATGCAGAAACAGAGAAGGGTAAAGAAACTAAAAGAGATAGAATATGTATCGAAGTACTTGAGAGAGAAATGCGAAGGAATCCAATCGCTGGGAATGTTTCTGTTTTTTCGCATTCAGTGGGTGATGATTTGCACATGAAGCTACTCTATCTTGAGAATAGAGTGGCATTTGCAAGATTATTCTTCCCAAGCGAAGCAAAGCTAGTCATGGACATTGCACATGCCGAGACATCATCAAAATTTGCAGGGATTTCTCAGTCAAAAGGTCTTGGCAGGAACTTAAGACAGGTTGATTTAAATGAGAATCCGGTAGACCAAAATAAAAGACTTCTTTCCAGGATGGAAGCCCTTACGAAAACTGTGGAGATGGGTCGACGATATTTTCCTCACTGCTCAGATCTACTGGATAAGTTCATGGAAGATGATCTCCCGGATTTATTTTATCTTGAAAAGGGTACTGACGAAGAACAGAAAGTAAAGCGGAGGCGCTTTGTGGAGCTGAAAGAGGAGGTGCAAAAGGCTTTCAACAAGGACAAGGCTGAGCTCCGCCACTCCAAGTTGCCATCTTCATCATCTTTAAAAGATGCTGCGAATTACAAAACTGTGAGATGA 1746 0.417 MDLSAEPSSSLSFTSSSRLSNGSVCHSMSSFSVRDLGHNLDVVSLSKLSSNLGQLLVDSSFDFSDANIVVEGTPVGVHRCILAARSNFFYELFRKEKGTEKDGKLKYYMSDLLPYGRVGYEAFLLFLGYVYTGKLNPSPMEVSTCVDNTCCHDACRPAITFAVELMYASSIFQIPELVSLFQRRLLNFVGKAAVEDVIPILMVAFHCQLSLLVTQCLERIARSDLDSITIEKELPHELSESFKLLCHNSHPDMEQNATIDPLHQKRISRIHKALDSDDVELVKLLLTESDVTLDQANALHYAAAYCDPKVVSEVLSLGLADVNLRNSRGYTVLHIAAMRKEPSVIVSLLTKGACASDLTFDGQSAVSICKRLTRPKDYHAETEKGKETKRDRICIEVLEREMRRNPIAGNVSVFSHSVGDDLHMKLLYLENRVAFARLFFPSEAKLVMDIAHAETSSKFAGISQSKGLGRNLRQVDLNENPVDQNKRLLSRMEALTKTVEMGRRYFPHCSDLLDKFMEDDLPDLFYLEKGTDEEQKVKRRRFVELKEEVQKAFNKDKAELRHSKLPSSSSLKDAANYKTVR* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01774 581 CDD BTB_POZ_NPR_plant 47 189 - -
Pte13g01774 581 SUPERFAMILY Ankyrin repeat 254 371 IPR036770 -
Pte13g01774 581 Pfam Ankyrin repeats (3 copies) 271 353 IPR002110 GO:0005515
Pte13g01774 581 MobiDBLite consensus disorder prediction 564 581 - -
Pte13g01774 581 Pfam NPR1/NIM1 like defence protein C terminal 370 570 IPR021094 -
Pte13g01774 581 Pfam BTB/POZ domain 62 177 IPR000210 GO:0005515
Pte13g01774 581 Gene3D - 261 402 IPR036770 -
Pte13g01774 581 MobiDBLite consensus disorder prediction 1 21 - -
Pte13g01774 581 MobiDBLite consensus disorder prediction 556 581 - -
Pte13g01774 581 FunFam Regulatory protein NPR3 38 221 - -
Pte13g01774 581 SMART BTB_4 64 189 IPR000210 GO:0005515
Pte13g01774 581 ProSiteProfiles Ankyrin repeat profile. 328 353 IPR002110 GO:0005515
Pte13g01774 581 SMART ANK_2a 294 324 IPR002110 GO:0005515
Pte13g01774 581 SMART ANK_2a 265 293 IPR002110 GO:0005515
Pte13g01774 581 SMART ANK_2a 328 360 IPR002110 GO:0005515
Pte13g01774 581 ProSiteProfiles Ankyrin repeat region circular profile. 328 353 - -
Pte13g01774 581 ProSiteProfiles BTB domain profile. 64 139 IPR000210 GO:0005515
Pte13g01774 581 FunFam regulatory protein NPR3-like 262 402 - -
Pte13g01774 581 SUPERFAMILY POZ domain 49 187 IPR011333 -
Pte13g01774 581 Gene3D Potassium Channel Kv1.1; Chain A 38 222 IPR011333 -
Pte13g01774 581 PANTHER REGULATORY PROTEIN NPR3 10 572 IPR044292 GO:0009862|GO:2000022|GO:2000031
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01774 Pte-Chr13 30431079 30436654 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pte13g01774 NPR1_like_C 1.2e-89 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01774 K14508 - gmx:100217338 866.3