Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01762 ATGCAAAGCCAGCTTGTGTGTAGTGGGTGTCGCAGCATCCTTCTGTATCCTAGAGGGGCTACAAATGTTTGTTGCGCGTTGTGCAGTACAATTACCTCGGTCCCACCACCAGGAATGGAAATGACTCAACTTATATGTGGAGGCTGCAGGACACTGCTAATGTATACTCGAGGAGCTACAAGTGTACGATGCTCATGTTGTCATACAGTGAATCTTGCACCAGCATCTAATCCAATGGCCCACATCAGTTGTGTGAATTGTCGAACGACACTCATGTATCCATGCGGAGCTCCCTCAGTAAAATGTGCTGTTTGCCACTTCATTACTAATGTTTCTATGACAAATGGGAGGGTTCCTATTCCTGCACAGAGACCTAATGGTGTCACTTCCGGAACACTGTCTTCTACTTCTTCCATGCCAGATTCTCAGAGCCAAACTGTGGTTGTAGAAAATCCTATGTCAGTTGATGAAAGTGGCAAATTGGTGAGCAATGTCGTGGTTGGTGTTACGACAAAGAAAAAATAG 525 0.4533 MQSQLVCSGCRSILLYPRGATNVCCALCSTITSVPPPGMEMTQLICGGCRTLLMYTRGATSVRCSCCHTVNLAPASNPMAHISCVNCRTTLMYPCGAPSVKCAVCHFITNVSMTNGRVPIPAQRPNGVTSGTLSSTSSMPDSQSQTVVVENPMSVDESGKLVSNVVVGVTTKKK* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01762 174 NCBIfam zinc finger domain, LSD1 subclass 43 72 IPR005735 -
Pte13g01762 174 NCBIfam zinc finger domain, LSD1 subclass 81 110 IPR005735 -
Pte13g01762 174 NCBIfam zinc finger domain, LSD1 subclass 4 34 IPR005735 -
Pte13g01762 174 PANTHER PROTEIN LSD1 2 174 IPR040319 -
Pte13g01762 174 Pfam LSD1 zinc finger 84 108 IPR005735 -
Pte13g01762 174 Pfam LSD1 zinc finger 46 70 IPR005735 -
Pte13g01762 174 Pfam LSD1 zinc finger 7 31 IPR005735 -
Pte13g01762 174 MobiDBLite consensus disorder prediction 120 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01762 Pte-Chr13 30332867 30338160 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Pte13g01762 zf-LSD1 1.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01762 - - qsa:O6P43_025994 271.552