LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte13g01740	ATGAATAATCATTTAGGGAGGCCTGCATCAGGCAAGCAAAGGCTAAAAGCTCTATTGCTTCAAAAGGATAATCGCGTTTGTGCAGATTGTGATGGTCCAGATCCTAAATGGGCGTCAGCCAATATTGGAGTTTTCATATGCTTAAAGTGTTGCGGTGTTCACAGAAGTCTTGGTACTCATATATCAAAGGTCTTGTCTGTGACACTGGATGAATGGTCTGAGGATGAGATTGATGCTATGATTGAAGTTGGAGGAAATGCATCTGCTAACTCCATTTATGAAGCCCATATTCCAGAAGGATATACCAAGCCGGGACCAGGTTCCAGTCATGACGTGCGAACGAAGTACATCCGGTCGAAATATGAACTTCAAGAGTTTCTGAAACCAAGTTTGCGGATAGCCTCAATGCCATCTAATAAGAGCTCTTCACATTCAAGTTTATCAAAGGAAATTTTAAGTGGATTACGTTTGTCAAGCACGTCGGGAAAACAGGAAGGCATGGTTGAATTCATTGGATTATTAAAGGTGAAAGTGATTAAAGGTACAAATTTAGCTATCAGGGATATGATGACAAGTGATCCATATGTTGTTCTGCGTCTAGGTCAACAGACTGCCCAAACGAGTGTTATTCATAGTAACTTGAATCCAGTCTGGAATGAAGAGCTAATGCTATCTGTTCCTCAGTCGTATGGACAGTTGAAGTTGCAAGTGTTTGATCATGACACTTTCTCTGCTGATGACATTATGGGAGAAGCAGAGATTGATCTGCAACCCATGATAACATCTGCGACAGCCTTCGGGAATGCGGGAATGTTTTCAAATATGCAGATAGGAAAATGGCTGAAATCACATGACAATGCCCTTGTAGAAGATAGTGCAGTCAATATAATTGACGGTAAAGTTAAACAGGAGATAACACTCAAACTCCAGAATGTGGAATGCGGAGTGATAGATTTAGAACTTGAGTGGATGGCACTTGACCAATAG	987	0.4113	MNNHLGRPASGKQRLKALLLQKDNRVCADCDGPDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDEWSEDEIDAMIEVGGNASANSIYEAHIPEGYTKPGPGSSHDVRTKYIRSKYELQEFLKPSLRIASMPSNKSSSHSSLSKEILSGLRLSSTSGKQEGMVEFIGLLKVKVIKGTNLAIRDMMTSDPYVVLRLGQQTAQTSVIHSNLNPVWNEELMLSVPQSYGQLKLQVFDHDTFSADDIMGEAEIDLQPMITSATAFGNAGMFSNMQIGKWLKSHDNALVEDSAVNIIDGKVKQEITLKLQNVECGVIDLELEWMALDQ*	329

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte13g01740	328	Gene3D	Arf GTPase activating protein	2	133	IPR038508	-
	Pte13g01740	328	Pfam	C2 domain	172	261	IPR000008	-
	Pte13g01740	328	ProSiteProfiles	C2 domain profile.	151	269	IPR000008	-
	Pte13g01740	328	FunFam	ADP-ribosylation factor GTPase-activating protein AGD12	170	328	-	-
	Pte13g01740	328	PRINTS	HIV Rev interacting protein signature	64	85	IPR001164	GO:0005096
	Pte13g01740	328	PRINTS	HIV Rev interacting protein signature	43	60	IPR001164	GO:0005096
	Pte13g01740	328	PRINTS	HIV Rev interacting protein signature	24	43	IPR001164	GO:0005096
	Pte13g01740	328	Pfam	Putative GTPase activating protein for Arf	13	128	IPR001164	GO:0005096
	Pte13g01740	328	Gene3D	C2 domain	170	323	IPR035892	-
	Pte13g01740	328	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12	5	328	IPR044518	GO:0005096\|GO:0005543
	Pte13g01740	328	CDD	ArfGap	15	121	-	-
	Pte13g01740	328	CDD	C2_ArfGAP	171	315	-	-
	Pte13g01740	328	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	12	137	IPR001164	GO:0005096
	Pte13g01740	328	SMART	C2_3c	173	268	IPR000008	-
	Pte13g01740	328	SUPERFAMILY	ArfGap/RecO-like zinc finger	12	129	IPR037278	-
	Pte13g01740	328	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	172	316	IPR035892	-
	Pte13g01740	328	FunFam	Arf-GAP with dual PH domain-containing protein 1	7	135	-	-
	Pte13g01740	328	SMART	arf_gap_3	12	134	IPR001164	GO:0005096

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte13g01740	Pte-Chr13	30124244	30128117	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte13g01740	5	329	C2H2 Transcription Factor Family	AT4G21160	72.205	0.0	505

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte13g01740	K12486		-	zju:107406254	522.702