Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01728 ATGAGCTCGAGGTTGACAGGGAAGGTGAAATGGTTCAATGACCAGAAGGGTTATGGCTTCATTACCCCTGATGACGGAGGCGAGGAAATCTTTGTTCACCACTCCTCAATCCGTTCTGGATCGGATGGTTTCCGGAGTCTCGGTGATGATGAGTCTGTGGAGTTTATTGTCGAGACTGAAACCGGGGGCCGCTCTAAGGCTACGGACGTGACTGGCCCAAATGAGTCGCCTGTCCAGGGAAGTCAGCGTGGGAGTGCTGGTGGCGGTGGATACGGAGGCGGCGGCGGTCGTGGGGGTTATGGTGGTGGTGGTGGGGGGTTTCGAGGTGGAAGAGGTGGTAGAGGTGGAGGTGGGTATGGGGGTAACTATGGAGGTGGAGATGGCTATGGTGGTGGGTATGGAGGTGGAAGTGGGTATGGCTATGGAGGTGGCGGTGGCGGTGGCGGTTCCGGCTGTTTCAAGTGTGGGGAAGAAGGACACATTGCTAGGGACTGTTACCAAGGCGGCGGAGGCGGAGGTGGAAGACGCGGCGGCGGAGGTGGAGGTGGAGGTGGAGGCGGAAATTGCTACACCTGCGGTGAATCTGGACATTTCTCCAGGGATTGCCCAGCTAACTCTCGTTGA 624 0.5801 MSSRLTGKVKWFNDQKGYGFITPDDGGEEIFVHHSSIRSGSDGFRSLGDDESVEFIVETETGGRSKATDVTGPNESPVQGSQRGSAGGGGYGGGGGRGGYGGGGGGFRGGRGGRGGGGYGGNYGGGDGYGGGYGGGSGYGYGGGGGGGGSGCFKCGEEGHIARDCYQGGGGGGGRRGGGGGGGGGGGNCYTCGESGHFSRDCPANSR* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01728 207 Gene3D - 1 85 IPR012340 -
Pte13g01728 207 ProSiteProfiles Zinc finger CCHC-type profile. 152 165 IPR001878 GO:0003676|GO:0008270
Pte13g01728 207 SUPERFAMILY Retrovirus zinc finger-like domains 143 205 IPR036875 GO:0003676|GO:0008270
Pte13g01728 207 PANTHER COLD SHOCK DOMAIN PROTEIN 2 112 204 - -
Pte13g01728 207 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Pte13g01728 207 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Pte13g01728 207 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Pte13g01728 207 SMART csp_8 6 73 IPR011129 GO:0003676
Pte13g01728 207 ProSiteProfiles Zinc finger CCHC-type profile. 189 203 IPR001878 GO:0003676|GO:0008270
Pte13g01728 207 CDD CSP_CDS 6 72 IPR002059 GO:0003676
Pte13g01728 207 Pfam Zinc knuckle 151 165 IPR001878 GO:0003676|GO:0008270
Pte13g01728 207 Pfam Zinc knuckle 188 203 IPR001878 GO:0003676|GO:0008270
Pte13g01728 207 Pfam 'Cold-shock' DNA-binding domain 6 72 IPR002059 GO:0003676
Pte13g01728 207 SMART c2hcfinal6 151 167 IPR001878 GO:0003676|GO:0008270
Pte13g01728 207 SMART c2hcfinal6 188 204 IPR001878 GO:0003676|GO:0008270
Pte13g01728 207 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Pte13g01728 207 ProSiteProfiles Cold-shock (CSD) domain profile. 4 72 IPR002059 GO:0003676
Pte13g01728 207 Gene3D - 184 207 - -
Pte13g01728 207 Gene3D - 148 176 - -
Pte13g01728 207 MobiDBLite consensus disorder prediction 64 83 - -
Pte13g01728 207 SUPERFAMILY Nucleic acid-binding proteins 3 77 IPR012340 -
Pte13g01728 207 MobiDBLite consensus disorder prediction 59 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01728 Pte-Chr13 30024044 30026952 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Pte13g01728 CSD 1.1e-22 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01728 - - jre:108993418 166.007