Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01685 ATGGAAGAAGAGAAAGGACTAGTAGCTCAAATGCTAATCGACATGGTGAACGAGATAGCTATCATATCTGATTACAGATGTACGGTAAAGAAGCAATATTGTAATCTAGCTAGACGACTGAAGCTGTTGATTCCAATGTTTGAAGAGATTAGGGACAGCAGAGCAGCTTTCTCTCCGGACACTTTGAAAGCTTTGGTCTCATTCAAAGAAGCTCTCGAGCTAGCGAAAGATATCCTTAGATTCGGAAGTGAAGGCAGCAAAATTTACCTGGTTTTAGAGAGGGAGCAGATTATGAACAAATTTCATGATGTGTGCGCTCAGTTGGAAAAAGCTTTAAGTGACATTTCATATGATAAATTAGACATATCTGATGAAGTTAAGGAGCAAGTTGAGCTTGTGCTTACCCAATTCAGAAGAGCTAAAGGAAGGGAGGACTCCCTTGACGTTGAGTTGTATGAGGATCTCTTATCCCTTTACAACCAGAGTAGTGATTTAGTAACAGACCCAGCTATCATAAGGAGATTAGCTGAGAAGTTACAACTAACTGGGATAAGTGATTTGACACAAGAGTCAATAGCTCTGCATGAAATAGTTTCTGGCAGTGGTGAGGATCCGGGAAAAAGCATTGAAAAGATGTCCATGTCATTGAAGAAGATTAAGGATTTTGTACAAATTGAAATTCCAGATGCGGATGCTACTGTTGGTGGAAAAGAGGTTTCTTCCAGTTGCAGCAAACAAGGAGCTAATGAAAAGAACCATCAAGCCCCTGTTATCCCAGATGATTTTCGGTGTCCTATATCTTTGGAATTGATGAAGGATCCAGTAATTGTTTCAACAGGACAGACATACGAACGTTCGTGCATTGAGAAGTGGTTAGAAGCTGGCCATGGAACTTGTCCAAAGACACAGCAGGCCCTTTCTAGTACTGCACTCACACCAAACTATGTCTTAAGAAGCCTCATAGCCCAGTGGTGTGAAGCAAATGGCATAGAACCTCCAAAAAGGCCAAGCAGTTCACATCCCAGTAAATCTTCATCTGCCTGCTCACCTGCTGAGCGTGGTAAAATTGAAATTCTTCTCCGTAAGCTAACATCTGGAAGTCCCGAAGACCAAAGATCTGCTGCTGGTGAGATCCGCCTTCTAGCCAAGCGCAATGCTGATAATCGTGTCGCCATTGCTGAAGCTGGTGCTATCCCACTCCTCGTTGATCTTCTTTTAACACCTGACTCTCGGACACAAGAGCATGCTGTTACTGCTCTTTTGAATCTTTCCATATGCGAGAATAACAAGGGAAGTATCGTATCTTCCGGGGCTGTTCCTGGAATAGTTCAAGTGCTCAAGAAAGGGAGCATGGAAGCTCGTGAGAATGCAGCTGCAACCCTATTTAGTCTGTCAGTCATAGATGAAAATAAGGTGACGATTGGTTCTTCGGGAGCCATTCCACATCTGGTTACACTTCTAAGTGAAGGCACCCAACGAGGCAAGAAGGATGCTGCAACAGCGCTCTTCAATCTGTGCATCTACCAAGGGAATAAGGGAAAAGCAGTAAGAGCTGGCGTAGTTCCTACACTAATGAGGCTCCTAACAGAACATGGAGGAGGAATGGTGGATGAAGCATTGGCTATTCTTGCCATACTGTCTAGCCATCCAGAAGGGAAGGCTGCTATTGGAGCTGCAGAGGCTGTTCCAGTTTTGGTTGAAGTTATAGGCAACGGATCTCCAAGGAACAAAGAGAATGCTGCAGCTGTATTGGTTCACCTATGTTCAGGAGACCAACAGTACCTACGAGATGCCCGTGAGCTAGGGGTGATGGTTCCATTGGTTGATTTGGCTCGAAACGGCACAGACCGAGGCAAAAGAAAGGCTGCCCAGCTGCTTGATCGAATGAGTAGGTATATTGAGCAGCAAGAACAGCAGCTGGCTCGAGTAGAATCTGAAACTCAACCTCAGAGTCAAGAGTCATGA 1965 0.4448 MEEEKGLVAQMLIDMVNEIAIISDYRCTVKKQYCNLARRLKLLIPMFEEIRDSRAAFSPDTLKALVSFKEALELAKDILRFGSEGSKIYLVLEREQIMNKFHDVCAQLEKALSDISYDKLDISDEVKEQVELVLTQFRRAKGREDSLDVELYEDLLSLYNQSSDLVTDPAIIRRLAEKLQLTGISDLTQESIALHEIVSGSGEDPGKSIEKMSMSLKKIKDFVQIEIPDADATVGGKEVSSSCSKQGANEKNHQAPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQALSSTALTPNYVLRSLIAQWCEANGIEPPKRPSSSHPSKSSSACSPAERGKIEILLRKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVDLLLTPDSRTQEHAVTALLNLSICENNKGSIVSSGAVPGIVQVLKKGSMEARENAAATLFSLSVIDENKVTIGSSGAIPHLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMRLLTEHGGGMVDEALAILAILSSHPEGKAAIGAAEAVPVLVEVIGNGSPRNKENAAAVLVHLCSGDQQYLRDARELGVMVPLVDLARNGTDRGKRKAAQLLDRMSRYIEQQEQQLARVESETQPQSQES* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01685 654 FunFam RING-type E3 ubiquitin transferase 533 650 - -
Pte13g01685 654 FunFam RING-type E3 ubiquitin transferase 433 532 - -
Pte13g01685 654 Pfam Armadillo/beta-catenin-like repeat 550 589 IPR000225 GO:0005515
Pte13g01685 654 Pfam Armadillo/beta-catenin-like repeat 385 424 IPR000225 GO:0005515
Pte13g01685 654 Pfam Armadillo/beta-catenin-like repeat 468 506 IPR000225 GO:0005515
Pte13g01685 654 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 396 438 IPR000225 GO:0005515
Pte13g01685 654 Coils Coil 619 646 - -
Pte13g01685 654 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 519 561 IPR000225 GO:0005515
Pte13g01685 654 FunFam RING-type E3 ubiquitin transferase 339 432 - -
Pte13g01685 654 FunFam RING-type E3 ubiquitin transferase 5 118 - -
Pte13g01685 654 SMART Ubox_2 261 324 IPR003613 GO:0004842|GO:0016567
Pte13g01685 654 Gene3D - 339 449 IPR011989 -
Pte13g01685 654 PANTHER U BOX DOMAIN-CONTAINING 30 629 - -
Pte13g01685 654 MobiDBLite consensus disorder prediction 331 351 - -
Pte13g01685 654 SUPERFAMILY RING/U-box 251 334 - -
Pte13g01685 654 MobiDBLite consensus disorder prediction 335 349 - -
Pte13g01685 654 FunFam RING-type E3 ubiquitin transferase 258 331 - -
Pte13g01685 654 SMART arm_5 508 548 IPR000225 GO:0005515
Pte13g01685 654 SMART arm_5 426 466 IPR000225 GO:0005515
Pte13g01685 654 SMART arm_5 591 631 IPR000225 GO:0005515
Pte13g01685 654 SMART arm_5 549 589 IPR000225 GO:0005515
Pte13g01685 654 SMART arm_5 467 507 IPR000225 GO:0005515
Pte13g01685 654 SMART arm_5 385 425 IPR000225 GO:0005515
Pte13g01685 654 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842|GO:0016567
Pte13g01685 654 CDD RING-Ubox_PUB 259 311 IPR045210 -
Pte13g01685 654 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 437 479 IPR000225 GO:0005515
Pte13g01685 654 Gene3D - 8 118 IPR036537 GO:0007166
Pte13g01685 654 CDD MLKL_NTD 30 138 - -
Pte13g01685 654 Pfam U-box domain 258 328 IPR003613 GO:0004842|GO:0016567
Pte13g01685 654 SUPERFAMILY ARM repeat 355 639 IPR016024 -
Pte13g01685 654 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 331 IPR013083 -
Pte13g01685 654 Gene3D - 450 644 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01685 Pte-Chr13 29652091 29656822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01685 1 654 U-box Gene Family AT3G46510 71.603 0.0 924
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01685 - - qsa:O6P43_000217 1018.07