Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01679 ATGGAGGATAGCTTGTCTGAGTTTTTTGATGAATTTGGGGACCCAAGCCTAGGAGGAGACGATCTCTTAGATATTTTGGAGAGCTTGGATGGTGTCCTAGATTTCCCTCCATTTGAAGAAGCAGCTGTCGTTAGCACGAAGGAGAAGGAAGGGAGTATGATCTCAAGGTTAGTGTCACAGAAGTCTAGTAATTCTTCAAGTATTCGGCAAGATTACTCAGAAACTGATCATCATCAGCTTGAAGCTTCACCAAAGAGAAAGAGACAGAAGTTCGATGTTACTCCTCCAGAAGAAGGTAACATGGATTCGATGGAAGGTAAAATGGATTGTCAGCAAAGGATCACTCATATCACAGTGGAGCGCAAACGAAGAAAGCAAATGAACGAGCATTTGTCTGTTTTGAGGTCTCTTATGCCGGGCTTTTATGTCAAAAGGGGGGATCAAGCATCCATAATTGGTGGTGTTATCCATTACATCAACGAATTGCAGCAAGTTCTACAATCACTTGAAGCCAAGAAAAATAGGAAAGTGTACAGTGTAGTTCTTAGCCCTAGAATTGTTTCAAGTCCAAGGCATTCACAACTGAGTCCAAGGAAGGTGCCTCTAAGCCCTAGAGTAAACTTACCCATAAGTCCGAGAACCCCACTGCCAAGTAGCCCTTACAGGTCAAGATTGCAACAAAATGGTTACCTCTCTCCTACCGCAGCTAGTTCCCTCGAACCATCTCCTTCATCTTCCGCCACTTACTCAACCATCCATGACGGTGTCAATGAGCTTGTAGCTAATTCTAAGTCCGCCATTGCCGATGTGGAGGTCAAGTTTTCGGGTGCAAACCTTGTTTTGAAAACGGTTTCTCCTAGACTACCAGGTCAAGCTTTAAAGATTATTTCAACACTTGAGGATCTATCCCTTGAAATCCTCCATGCCAGCATTAGCACGGTGGAGGAAACCATGCTAAATTCCTTCACTATCAAGATTGGAATTGAATGCAAACTCAGTGCGGAGGAGCTGGCTCACCAAATCCAGCAAACATTCTGCTAG 1041 0.44 MEDSLSEFFDEFGDPSLGGDDLLDILESLDGVLDFPPFEEAAVVSTKEKEGSMISRLVSQKSSNSSSIRQDYSETDHHQLEASPKRKRQKFDVTPPEEGNMDSMEGKMDCQQRITHITVERKRRKQMNEHLSVLRSLMPGFYVKRGDQASIIGGVIHYINELQQVLQSLEAKKNRKVYSVVLSPRIVSSPRHSQLSPRKVPLSPRVNLPISPRTPLPSSPYRSRLQQNGYLSPTAASSLEPSPSSSATYSTIHDGVNELVANSKSAIADVEVKFSGANLVLKTVSPRLPGQALKIISTLEDLSLEILHASISTVEETMLNSFTIKIGIECKLSAEELAHQIQQTFC* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01679 346 MobiDBLite consensus disorder prediction 52 70 - -
Pte13g01679 346 Gene3D - 102 176 IPR036638 GO:0046983
Pte13g01679 346 PANTHER TRANSCRIPTION FACTOR FAMA 20 345 IPR044283 GO:0003700|GO:0010052
Pte13g01679 346 SMART finulus 117 168 IPR011598 GO:0046983
Pte13g01679 346 MobiDBLite consensus disorder prediction 190 225 - -
Pte13g01679 346 Pfam Helix-loop-helix DNA-binding domain 112 163 IPR011598 GO:0046983
Pte13g01679 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 111 187 IPR036638 GO:0046983
Pte13g01679 346 MobiDBLite consensus disorder prediction 46 104 - -
Pte13g01679 346 MobiDBLite consensus disorder prediction 71 95 - -
Pte13g01679 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 111 162 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01679 Pte-Chr13 29583239 29585393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01679 1 326 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 47.802 1.40e-87 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte13g01679 HLH 6.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01679 K20558 - rcu:8274388 405.601