Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01663 ATGATTATCAAGCGCAACTTCAAATCCCCAATGCCGAGTCTGAAACGGTGCAAACTTGCTAATTCAGGTGGCGATGAAGACGAAAACTCTGCTGCTCGGAAGAAAAGAAAGACCTATAGCTATTACCATTTGAATCTTCTCAGTGAGGTCGCCGCCGGTATTATTCCTATGAATCTTCACGGTATTTTGAGTCCTGGCGTGGCAGAGAAGACCTTGACTGCATCATGGTGCACACAATTACCTTGCTTCCCTGGAAATGTAGAGTCGAAGTCTGAGACTGCCACGCGGGACTCTGTAAAACCAGAAAAGGTGAACGGAACAGTGGAGGTTTCACGACCACCACTAGTGAGAAGCTCAAGGGGTCGAGTTCAGGTACTTCCTTCGCGATTCAGCGATTCAATTATGGAGGATTGGAGGAAAGACAGCGAGACTAGCTTACGTGATTATAGTTTTGAAAAGGACAATAAAGATTTTAATTTTAAAACAACGACAAGCAGCCAGAATCGTTATTCAAAAGTAGCTGTCAAGAAAGATGACAAAAACGGCTACAAGTGTAGTAAATATGCTACATTGTGCGAAGAAGACGAGGAAGTGGGGAAAATAGTTGCAAGGCGTGTTGGTTTTAAGAACTTCGATAGCATGAGGAAATATTGGAACTCTCGACCAACAACCAATGAGAAATTGGTTGAGGGTGAGGACTGCATCGTGGATAAGGACGACGAAATTGCTTCTGCGGGAATCAATAGAGTCTCGAAGAACAGAAATGAGAAGTGGAGAAAGCAATATTGCCCTGAAGATTTTCATACGGGGGACATAGTGTGGGCAAAACCAGCTAAGAAGGAACCCTTTTGGCCAGCCATCATCATTGATCCAAATTCACAAGCACCAGAGTTGGTTTTGAGGTCCTGTATGGCTAATGCAGCTTGTGTGATGTTCCTTGGATACTCTGGTAATGGAAGTCAGAGGGATTATGCATGGGTGAAGCATGAAATGATTTTTCCATTTTCCGATTACGTTGACAGATTTCAGGATCAGCCTGAGTTGAATGACTGCCAACCTTCTTCTGAATTTCAAATGGCAATGGAGGAGGCATTTTTAGCTGAAGAGGGCTTTAGAGAAAAGTTGATAGAAGATATAAAATTGGCAGCTGCTAATACGTCTTTTGACAAATCCCTTGTGAGAGGTGTTCGAAAGCTCACTGGTGATGCAGATAGTTGGTATAATTACCAGGACTTTCTTTGGAAAGAGAAAGATTGCAAACTCTGTGAAGACTGTGGGGTGAGCCTTCCTCATAAAGTATCAAAGAAAATAAGTGTATCTCCTGGTTGCCAGTTCTTGTGTAGAACATGTTCTCAGTTAACAAAGCTGAAGCATCATTGTGGCATATGCAAGAAATTTTGGAATCATTCAGATAGCGGGAGTTGGGTACGTTGTGATGGATGCAAGGTGTGGGTACATACTGAATGTGATAAAATTTCCAGCAACCTTTTCAAGAAACTGGGAGGCACCGACTATTTCTGCCCCACATGCAAAGCTAAGTTTGATTTTGAATTATCAGATTATGAGAAGTCACAGCCAAAAGTGAAATGCCGCAAAAACAATGGGCAAATGGTGCTCACTAACAAGGTCACCGTTCTCTGCAATGGAGTAGAAGGCATATATTCTCCAAGTCTGCATTCAGTTGTATGCAAGTGTGGTTTCTGTGGAGCGAAGAGACAAGCACTTAGTCAATGGGAAAGACATACAGGTTCCAAATCAAGAAATTGGAGAACTAGTATCAAGGTGAAAGGCTCCATGCTGCCACTGGAACAATGGATGCTTGAGTTGGCAGAATTTCATGCAAACGCTACTGTCTCTGTGAAAACTAAAAGACCAGCTTCAAAAGAAAGAAAGTTGCTCAGTTTTTTACAAGAGGAGTACGAACCTGTTCTTGCAAAGTGGACGACTGAACGTTGTGCAATATGCAGATGGATTCAAGATTGGGATGACAACAAAATTATTATTTGTATCAGATGTCAAATTGCTGTTCATCAAGAATGCTATGGTGCAACAAATGTCCAAGATTTCACTTCATGGGTTTGCAGAGTATGTGAAACACCTGACATCCAACGGGAATGTTGCCTTTGCCCTGTGAAAGGTGGTGCTTTAAAGCCCACTGATGTTGGGACGCTGTGGGTTCATATAACATGTGCTTGGTATCGTCCAGAAGTCACTTTTGCAAGTGACGAAAAAATGGAACCTGTCTTGGGAATCTTGAGTATTCCCTCTAGTTCTTTTGTAAAGATTTGTGTTATCTGTAAGCAAATTCATGGTTCATGTACACAATGTTGCAAGTGTTCAACTTATTACCATGCCATGTGCGCTTCAAGGGCTGGGTACCGCATGGAGCTACATTGCTTAGAGAAAAATGGTAAAAAGATGAAAAGGATGATTTCTTTTTGTGCCTATCACAGGGCTCCAAACCCAGACACTCATCTCATAATACAATCCCCATCTGGAGTCCTTTCAACCAGAAACCGACTGCAAAATAAGAAGAAGGCTGGCTCTAGGCTAATCTCATCTAACCGAGTAACATTAGAAGAGGTTCCTACTGTAGATAATACTGAACTGGAACCATTTTCTGCAGCTAGATGCCGAGTTTTCAAAAGGACCAACACTAGCAAAAAGGGAGCAGCAGATGAAGCTGTTGCGCATAGAGTGAAGGGTCACTGCCAACATCCTTGGGATGCAATAAAAAGATTAAATAATCCCAGAGCTGTGAAGGAGGCTAAAACTTTTTCTTCTTTTAGGGAACGTCTTTACCACTTACAGAAAACAGAACATGAGCTGGTTTGCTTTGGAAGATCTGGCATACATGGATGGGGCCTCTTTGCACGTAGAAATATCAACGAAGGGGAAATGGTGATCGAGTATCGGGGTGAACAAGTGAGGCCTAGTGTTGCAGATATGAGGGAGGCACGTTACAGATTAGAAGGAAAAGACTGCTACCTGTTTAAGATCAGTGAAGAAGTGGTGGTGGATGCTACTGATGCAGGAAACATTGCCCGCCTAATTAATCATTCTTGCATGCCAAACTGCTACGCAAGGATCATGAGTGTGGGTGATGGTGAAAGCAGGATTGTACTCATTGCCAAGACTGATGTGTCTGAGGGTGAGGAGTTAACGTACGATTACTTATTTGATACAAATGAACCTGACGAGCTCAAAGTGCCTTGTCTCTGCAAAGCTCCAACTTGCAGAAAATTCATGAATTAG 3255 0.4258 MIIKRNFKSPMPSLKRCKLANSGGDEDENSAARKKRKTYSYYHLNLLSEVAAGIIPMNLHGILSPGVAEKTLTASWCTQLPCFPGNVESKSETATRDSVKPEKVNGTVEVSRPPLVRSSRGRVQVLPSRFSDSIMEDWRKDSETSLRDYSFEKDNKDFNFKTTTSSQNRYSKVAVKKDDKNGYKCSKYATLCEEDEEVGKIVARRVGFKNFDSMRKYWNSRPTTNEKLVEGEDCIVDKDDEIASAGINRVSKNRNEKWRKQYCPEDFHTGDIVWAKPAKKEPFWPAIIIDPNSQAPELVLRSCMANAACVMFLGYSGNGSQRDYAWVKHEMIFPFSDYVDRFQDQPELNDCQPSSEFQMAMEEAFLAEEGFREKLIEDIKLAAANTSFDKSLVRGVRKLTGDADSWYNYQDFLWKEKDCKLCEDCGVSLPHKVSKKISVSPGCQFLCRTCSQLTKLKHHCGICKKFWNHSDSGSWVRCDGCKVWVHTECDKISSNLFKKLGGTDYFCPTCKAKFDFELSDYEKSQPKVKCRKNNGQMVLTNKVTVLCNGVEGIYSPSLHSVVCKCGFCGAKRQALSQWERHTGSKSRNWRTSIKVKGSMLPLEQWMLELAEFHANATVSVKTKRPASKERKLLSFLQEEYEPVLAKWTTERCAICRWIQDWDDNKIIICIRCQIAVHQECYGATNVQDFTSWVCRVCETPDIQRECCLCPVKGGALKPTDVGTLWVHITCAWYRPEVTFASDEKMEPVLGILSIPSSSFVKICVICKQIHGSCTQCCKCSTYYHAMCASRAGYRMELHCLEKNGKKMKRMISFCAYHRAPNPDTHLIIQSPSGVLSTRNRLQNKKKAGSRLISSNRVTLEEVPTVDNTELEPFSAARCRVFKRTNTSKKGAADEAVAHRVKGHCQHPWDAIKRLNNPRAVKEAKTFSSFRERLYHLQKTEHELVCFGRSGIHGWGLFARRNINEGEMVIEYRGEQVRPSVADMREARYRLEGKDCYLFKISEEVVVDATDAGNIARLINHSCMPNCYARIMSVGDGESRIVLIAKTDVSEGEELTYDYLFDTNEPDELKVPCLCKAPTCRKFMN* 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01663 1084 ProSitePatterns Zinc finger PHD-type signature. 652 697 IPR019786 -
Pte13g01663 1084 SUPERFAMILY SET domain 931 1084 IPR046341 -
Pte13g01663 1084 Gene3D SET domain 835 1084 IPR046341 -
Pte13g01663 1084 ProSiteProfiles SET domain profile. 942 1059 IPR001214 GO:0005515
Pte13g01663 1084 SMART PHD_3 762 818 IPR001965 -
Pte13g01663 1084 SMART PHD_3 651 698 IPR001965 -
Pte13g01663 1084 SMART PHD_3 459 511 IPR001965 -
Pte13g01663 1084 SUPERFAMILY Tudor/PWWP/MBT 262 375 - -
Pte13g01663 1084 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 454 514 IPR013083 -
Pte13g01663 1084 SUPERFAMILY FYVE/PHD zinc finger 459 514 IPR011011 -
Pte13g01663 1084 CDD PHD_ATX3_4_5_like 651 697 IPR042011 -
Pte13g01663 1084 CDD ePHD_ATX3_4_5_like 706 817 IPR041955 -
Pte13g01663 1084 FunFam Histone-lysine N-methyltransferase 701 820 - -
Pte13g01663 1084 CDD SET_SETD1-like 929 1080 - -
Pte13g01663 1084 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1084 IPR025780 -
Pte13g01663 1084 MobiDBLite consensus disorder prediction 88 107 - -
Pte13g01663 1084 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 701 820 IPR013083 -
Pte13g01663 1084 SUPERFAMILY FYVE/PHD zinc finger 650 714 IPR011011 -
Pte13g01663 1084 FunFam Histone-lysine N-methyltransferase 917 1084 - -
Pte13g01663 1084 MobiDBLite consensus disorder prediction 1 32 - -
Pte13g01663 1084 Pfam PHD-finger 664 698 - -
Pte13g01663 1084 ProSiteProfiles Zinc finger PHD-type profile. 457 513 IPR019787 -
Pte13g01663 1084 Pfam PHD-finger 460 512 IPR019787 -
Pte13g01663 1084 ProSiteProfiles Zinc finger PHD-type profile. 649 700 IPR019787 -
Pte13g01663 1084 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 645 700 IPR013083 -
Pte13g01663 1084 ProSiteProfiles Extended PHD (ePHD) domain profile. 703 818 IPR034732 -
Pte13g01663 1084 Pfam PWWP domain 270 365 IPR000313 -
Pte13g01663 1084 SMART set_7 942 1065 IPR001214 GO:0005515
Pte13g01663 1084 SMART PostSET_3 1068 1084 IPR003616 -
Pte13g01663 1084 PANTHER PHD FINGER PROTEINS 76 535 - -
Pte13g01663 1084 CDD PWWP_AtATX3-like 270 373 - -
Pte13g01663 1084 ProSiteProfiles Post-SET domain profile. 1068 1084 IPR003616 -
Pte13g01663 1084 Pfam PHD-zinc-finger like domain 705 817 - -
Pte13g01663 1084 ProSiteProfiles PWWP domain profile. 269 338 IPR000313 -
Pte13g01663 1084 SMART PWWP_4 267 336 IPR000313 -
Pte13g01663 1084 Pfam SET domain 953 1058 IPR001214 GO:0005515
Pte13g01663 1084 Gene3D - 263 373 - -
Pte13g01663 1084 CDD PHD_TCF19_like 460 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01663 Pte-Chr13 29405896 29415465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01663 652 817 C2H2 Transcription Factor Family AT3G14740 34.286 4.96e-18 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte13g01663 zf-HC5HC2H_2 2.3e-25 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01663 - - qsa:O6P43_015012 1623.22