Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01653 ATGGACTTGGATAGCATTGAGTGTGTATCATCCTCGGATGGTATGGATGAAGATGAGATCCAACAACATCATACTCTGCATCCTTACCCTCACCATCACTCTGAATTTTCTTCCTCTAAACCACGCAATGGAGGGAACATCACTAATGTTGTGGGGCCAAACACTATTGCTCCTGCAACGAGTGTCCATGAATTGCTAGAATGCCCCGTGTGTACCAATTCCATGTACCCACCGATTCATCAGTGCCACAATGGTCATACCCTGTGTTTCACCTGTAAAACGAGAGTACACAATAGGTGTCCTACATGTAGAGAGGAGCTTGGAGATATTAGGTGTCTTGCACTGGAGAAGGTTGCTGAATCACTTGAGCTACCCTGCAAGTATTATTCCTTAGGATGTCCAGAAATATTTCCATATTACAGCAAACTCAAGCATGAGACAATCTGCGATTTTAGACCGTATAATTGCCCTTATGCTGGATCGGAATGTTCTGTTGTTGGGGACATCCCTTTTCTTGTCTCCCATTTGAGAGATGATCATAAGGTCGACATGCACACTGGATGCACATTTAACCATCGTTATGTCAAGTCTAATCCTCGTGAAGTAGAGAATGCAACATGGATGCTCACAGTATTCCATTGTTTTGGTCAATACTTCTGCCTTCATTTTGAAGCCTTCCAGCTAGGGTTGGCACCTGTATATATGGCATTCGTTCGTTTTATGGGTGATGACAATGAAGCCCGTAATTATAGCTATAGTCTTGAGGTTGGAGGTTGCAACAGGAAGCTCATTTGGGAAGGTACACCGAGAAGTATCCGAGATAGCCACCGCAAAGTAAGAGACAGCCATGACGGTCTTATTATCCAGAGAAACATGGCCCTTTTCTTTTCTGGTGGTGATAGGAAGGAGCTGAAGCTCAGAGTCACCGGGAGAATCTGGAAGGAACAACAGAATCCCGATGGTGGAGTGTGCATACCAAACCTTTGCAGCTGA 993 0.4461 MDLDSIECVSSSDGMDEDEIQQHHTLHPYPHHHSEFSSSKPRNGGNITNVVGPNTIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCFTCKTRVHNRCPTCREELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETICDFRPYNCPYAGSECSVVGDIPFLVSHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGLAPVYMAFVRFMGDDNEARNYSYSLEVGGCNRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDGGVCIPNLCS* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01653 330 ProSiteProfiles Zinc finger RING-type profile. 68 104 IPR001841 -
Pte13g01653 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 174 IPR013083 -
Pte13g01653 330 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 44 315 - -
Pte13g01653 330 Pfam Seven in absentia protein family 110 309 IPR018121 GO:0005737|GO:0006511|GO:0007275
Pte13g01653 330 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 175 309 IPR008974 GO:0005515
Pte13g01653 330 ProSiteProfiles Zinc finger SIAH-type profile. 121 181 IPR013010 GO:0008270
Pte13g01653 330 SUPERFAMILY TRAF domain-like 121 313 - -
Pte13g01653 330 CDD RING-HC_SIAHs 66 104 - -
Pte13g01653 330 SUPERFAMILY RING/U-box 62 108 - -
Pte13g01653 330 FunFam E3 ubiquitin-protein ligase SINAT3 120 176 - -
Pte13g01653 330 FunFam E3 ubiquitin-protein ligase SINAT5-like 177 309 - -
Pte13g01653 330 CDD Sina 182 310 - -
Pte13g01653 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 120 IPR013083 -
Pte13g01653 330 FunFam E3 ubiquitin-protein ligase SINAT3 11 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01653 Pte-Chr13 29315804 29320516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01653 37 316 C3H Transcription Factor Family AT2G41980 75.000 7.45e-159 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01653 K04506 - qsa:O6P43_015002 655.595