Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte13g01631 | ATGCAGATCTTCGTGAAAACCCTGACTGGGAAGACAATAACCCTTGAGGTTGAGTCCAGTGATACCATCGACAATGTGAAGACTAAGATCCAAGACAAAGAAGGAATTCCTCCGGACCAGCAGAGACTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGTACGCTTGCCGATTACAACATCCAGAAGGAGTCAACCTTGCATCTGGTTTTGAGGCTTCGTGGTGGCATAATTGAGCCATCCTTGATGGCATTGGCAAGAAAATACAACCAGGACAAGATGATTTGCCGCAAGTGCTATGCTAGGTTGCACCCACGTGCTGTAAACTGCAGGAAGAAGAAATGCGGACACAGCAATCAGCTGAGACCCAAGAAGAAGATCAAGTAA | 387 | 0.4806 | MQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK* | 129 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte13g01631 | 128 | Gene3D | - | 80 | 128 | IPR038587 | - | |
Pte13g01631 | 128 | FunFam | ubiquitin-60S ribosomal protein L40 | 79 | 128 | - | - | |
Pte13g01631 | 128 | ProSitePatterns | Ubiquitin domain signature. | 27 | 52 | IPR019954 | - | |
Pte13g01631 | 128 | Gene3D | - | 1 | 79 | - | - | |
Pte13g01631 | 128 | PRINTS | Ubiquitin signature | 32 | 52 | IPR019956 | - | |
Pte13g01631 | 128 | PRINTS | Ubiquitin signature | 11 | 31 | IPR019956 | - | |
Pte13g01631 | 128 | PRINTS | Ubiquitin signature | 53 | 74 | IPR019956 | - | |
Pte13g01631 | 128 | PANTHER | UBIQUITIN | 1 | 91 | - | - | |
Pte13g01631 | 128 | SMART | ubq_7 | 1 | 72 | IPR000626 | GO:0005515 | |
Pte13g01631 | 128 | ProSiteProfiles | Ubiquitin domain profile. | 1 | 76 | IPR000626 | GO:0005515 | |
Pte13g01631 | 128 | SUPERFAMILY | Ubiquitin-like | 1 | 76 | IPR029071 | - | |
Pte13g01631 | 128 | Pfam | Ribosomal L40e family | 78 | 127 | IPR001975 | GO:0003735|GO:0005840|GO:0006412 | |
Pte13g01631 | 128 | SUPERFAMILY | Zn-binding ribosomal proteins | 76 | 127 | IPR011332 | GO:0006412 | |
Pte13g01631 | 128 | Pfam | Ubiquitin family | 3 | 74 | IPR000626 | GO:0005515 | |
Pte13g01631 | 128 | CDD | Ubl_ubiquitin | 1 | 76 | - | - | |
Pte13g01631 | 128 | SMART | Ribosomal_L40e_3 | 77 | 128 | IPR001975 | GO:0003735|GO:0005840|GO:0006412 | |
Pte13g01631 | 128 | FunFam | Ubiquitin-60S ribosomal L40 fusion | 1 | 78 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte13g01631 | Pte-Chr13 | 29062708 | 29064795 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte13g01631 | 1 | 129 | Cytoplasmic Ribosomal Protein Gene Family | AT3G52590 | 98.450 | 3.80e-92 | 260 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte13g01631 | K02927 | - | mus:103972470 | 258.07 |