Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01620 ATGGCGGATGCTCACAATGCGAAACAACTTGGTGACACGACTTACACCAAAATCTTCGTTGGAGGATTACCTTGGCAAACCAATACAGACATAATGAAACAATATTTCGATCAGTTTGGAGAGATCGTAGAGGCCGTGGTGATCACTGATAAACGTACTGGAAGATCAAAAGGATATGGCTTTGTGACGTTTAAGGATCCTAACTCAGCGGGAAGAGCTTGTCAGAATCCTTACCCAGTTATTGATGGAAGAAGAGCTAACTGTAATCTTGCAGTCATGGGTGCACAAAGAAATCGTCCATCTACCCCAAAGCATGGAACAGGTCAGAAATTCAGTACAACCTCAGGGAACGTGGCGACCTACTCTGTCTTCAATCAACAGTTACCACAATATTTTATTCCCTCTCCAGCTTACAGGTACCCCGGATACTACGAACCCCAAGTTTATACAAACACAATGAATTATTACAATCCATATGGTGGGCAGTATGTTCCATCTCGTTATATCGTTGCAGCTTCGCCACAAGGAGCCATGTGGATCACAAATGCTAAAGGGACACATCACACTACCATGTCTGTGAAACCTACTGGAGTTCCCCCTTCAAGCTCAGTCAGGTCAGCTAAGGCAGCAGGAGCTAAGGCAGCAGGAGGTGAAACAGATACCACAGTCTGTAAACAAAAACCACCAGCAGCTTAA 696 0.4468 MADAHNAKQLGDTTYTKIFVGGLPWQTNTDIMKQYFDQFGEIVEAVVITDKRTGRSKGYGFVTFKDPNSAGRACQNPYPVIDGRRANCNLAVMGAQRNRPSTPKHGTGQKFSTTSGNVATYSVFNQQLPQYFIPSPAYRYPGYYEPQVYTNTMNYYNPYGGQYVPSRYIVAASPQGAMWITNAKGTHHTTMSVKPTGVPPSSSVRSAKAAGAKAAGGETDTTVCKQKPPAA* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01620 231 SUPERFAMILY RNA-binding domain, RBD 15 103 IPR035979 GO:0003676
Pte13g01620 231 PANTHER BOULE-RELATED 8 197 - -
Pte13g01620 231 MobiDBLite consensus disorder prediction 193 231 - -
Pte13g01620 231 Gene3D - 2 111 IPR012677 -
Pte13g01620 231 SMART rrm1_1 17 89 IPR000504 GO:0003723
Pte13g01620 231 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 97 IPR000504 GO:0003723
Pte13g01620 231 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Pte13g01620 231 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01620 Pte-Chr13 28960561 28963620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01620 12 91 C2H2 Transcription Factor Family AT2G19380 43.750 3.73e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01620 - - adu:107469851 218.009