Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte13g01619 ATGGCGGTTGCTGAGAATGCTGGGGTTAAAATTGACTCATCCAATCAAAATTTGGACAATAGTGTAGTATCGTCTGACACCACTGGAGCTGATTCCGTTGAGAATCCGGAACCCAGAGCTGATTCCATGAGCAACGGGGTTGACACTTCTAACAACGTCGATCAGAACATGGAGGTGTTGCAACAAGAAGACACTGCTGAGACCAATTTTTCAGTGGCTAAGATTTGCCAGATGCAAAATGGGTTTGACGCCAATGGTGTCCAGAACGAGCAGGTGGCTGTTAAGTCTGCTTCCTATGAGATGAATCAAATGCATAAAGGTGTCGGAGATGGAGATGATGGGGACGACAATTATAAGCGTGATATTAGGGACTTGGCGGAATTGCTCTCCAAGCTGAATCCTATGGCTGAGGAGTTTGTACCTACATCCTATGCTAAGAATCAAGCCTTTTTTGGAGCTGCTCTTGGTGCGTTTGGCTATACCAACAATTTTCTACTCCAAACTAATTTTGGGAATGTTAATGGACAGACTAATAGAAGGAAGAAGAATGGCTATACTCAGGGGAAGCGAAGGCTCGCCCAGAAAATGGATTTAGAGAAGCGAGAAGAGATGATTAGGAGGACAGTTTATGTGTCTGACATTGATCAACAGGTTACTGAAGAGCAGCTGGCAGCCCTCTTTATCAATTGTGGACAGGTCGTTGACTGTCGTGTTTGTGGCGATCCAAATTCTATCCTCCGCTTCGCCTTTGTTGAGTTCACTGATGAAGAAGGTGCAAGGGCTGCTTTGAATCTGTCTGGAACTATGCTTGGATATTACCCAGTTCGAGTACTGCCTTCCAAAACTGCAATTGCCCCTGTTAATCCAACATTCTTACCCAGGTCTGAAGATGAGCGAGAGATGTGTTCAAGAACCATATATTGTACAAATATTGACAAGAAGGTAACTCAAGCTGAAGTCAAACTTTACTTCGAATCACTTTGTGGAGAGGTTCAACGCTTGAGGCTGCTTGGTGATTATCATCACTCTACTCGCATTGCATTTGTCGAGTTCACTATGGCTGAGAGTGCAATTGCGGCTCTGAACTGCAGTGGTGTGGTCTTGGGCTCCCTCCCTATAAGGTTGGCCAACTGA 1134 0.4506 MAVAENAGVKIDSSNQNLDNSVVSSDTTGADSVENPEPRADSMSNGVDTSNNVDQNMEVLQQEDTAETNFSVAKICQMQNGFDANGVQNEQVAVKSASYEMNQMHKGVGDGDDGDDNYKRDIRDLAELLSKLNPMAEEFVPTSYAKNQAFFGAALGAFGYTNNFLLQTNFGNVNGQTNRRKKNGYTQGKRRLAQKMDLEKREEMIRRTVYVSDIDQQVTEEQLAALFINCGQVVDCRVCGDPNSILRFAFVEFTDEEGARAALNLSGTMLGYYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQAEVKLYFESLCGEVQRLRLLGDYHHSTRIAFVEFTMAESAIAALNCSGVVLGSLPIRLAN* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte13g01619 377 SUPERFAMILY RNA-binding domain, RBD 295 375 IPR035979 GO:0003676
Pte13g01619 377 SMART rrm1_1 208 278 IPR000504 GO:0003723
Pte13g01619 377 SMART rrm1_1 305 376 IPR000504 GO:0003723
Pte13g01619 377 SUPERFAMILY RNA-binding domain, RBD 182 283 IPR035979 GO:0003676
Pte13g01619 377 Gene3D - 297 375 IPR012677 -
Pte13g01619 377 FunFam Polyadenylate-binding protein-interacting protein 11 171 284 - -
Pte13g01619 377 Pfam Ataxin-2 C-terminal region 129 143 IPR009818 -
Pte13g01619 377 Gene3D - 169 284 IPR012677 -
Pte13g01619 377 FunFam Polyadenylate-binding protein-interacting protein 10 298 376 - -
Pte13g01619 377 MobiDBLite consensus disorder prediction 1 51 - -
Pte13g01619 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 282 IPR000504 GO:0003723
Pte13g01619 377 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 127 372 - -
Pte13g01619 377 CDD RRM2_CID8_like 300 377 IPR034825 -
Pte13g01619 377 MobiDBLite consensus disorder prediction 9 51 - -
Pte13g01619 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 271 IPR000504 GO:0003723
Pte13g01619 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 306 373 IPR000504 GO:0003723
Pte13g01619 377 CDD RRM1_CID8_like 205 284 IPR034823 -
Pte13g01619 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 304 377 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte13g01619 Pte-Chr13 28953853 28959042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte13g01619 206 368 Eukaryotic Initiation Factors Gene Family AT1G34140 26.347 7.65e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte13g01619 - - qsa:O6P43_014935 564.303